Skip to main content

 1MKF | pdb_00001mkf

VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS 68

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1mkfb_ All beta proteins Viral chemokine binding protein m3 Viral chemokine binding protein m3 Viral chemokine binding protein m3 Viral chemokine binding protein m3 Murine herpesvirus 68 (Murid gammaherpesvirus 4 ) [TaxId: 33708 ], SCOPe (2.08)
Ad1mkfa_ All beta proteins Viral chemokine binding protein m3 Viral chemokine binding protein m3 Viral chemokine binding protein m3 Viral chemokine binding protein m3 Murine herpesvirus 68 (Murid gammaherpesvirus 4 ) [TaxId: 33708 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyViral chemokine binding protein m3 8043647 3001430 SCOP2B (2022-06-29)
ASCOP2 FamilyViral chemokine binding protein m3 8031269 4002571 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyViral chemokine binding protein m3 8043647 3001430 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPS-DHe1mkfB1 A: alpha arraysX: PBZ domainH: PBZ domainT: PBZ domainF: PS-DHECOD (v295.2)
AM3e1mkfA1 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: M3ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.1330 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
B2.60.40.1340 Mainly Beta Sandwich Immunoglobulin-like Chemokine-binding protein M3-likeCATH (4.3.0)
A2.60.40.1330 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A2.60.40.1340 Mainly Beta Sandwich Immunoglobulin-like Chemokine-binding protein M3-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF09213M3 (M3)M3Members of this family of viral chemokine binding proteins adopt a structure consisting of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds. They bind with the CC-chemokine MCP-1, acting as cytokine d ...Members of this family of viral chemokine binding proteins adopt a structure consisting of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds. They bind with the CC-chemokine MCP-1, acting as cytokine decoy receptors [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
M3 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR015950Chemokine-binding M3, subdomain 1, viralHomologous Superfamily
A, B
IPR015951Chemokine-binding M3, subdomain 2, viralHomologous Superfamily
A, B
IPR015296Chemokine-binding M3, viralFamily
A, B
IPR036323Chemokine-binding M3 superfamilyHomologous Superfamily