1MHQ

Crystal Structure Of Human GGA2 VHS Domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1mhqa_	All alpha proteins	alpha-alpha superhelix	ENTH/VHS domain	VHS domain	ADP-ribosylation factor binding protein Gga2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1mhqb_	All alpha proteins	alpha-alpha superhelix	ENTH/VHS domain	VHS domain	ADP-ribosylation factor binding protein Gga2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	VHS domain	8020473	4001359	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ENTH/VHS domain-like	8032853	3000164	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	ENTH/VHS domain-like	8032853	3000164	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	VHS	e1mhqA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: VHS	ECOD (1.6)
B	VHS	e1mhqB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: VHS	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.90	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	1.25.40.90	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00790	VHS domain (VHS)	VHS domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ADP-ribosylation factor binding protein GGA2	binding phospholipid binding lipid binding phosphatidylinositol binding small GTPase binding protein binding enzyme binding GTPase binding ubiquitin binding ubiquitin-like protein binding	protein localization Golgi to plasma membrane transport establishment of protein localization cellular localization nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport vesicle-mediated transport localization cellular macromolecule localization protein localization to cell periphery establishment of protein localization to membrane protein localization Golgi to plasma membrane transport establishment of protein localization cellular localization nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport vesicle-mediated transport localization cellular macromolecule localization protein localization to cell periphery establishment of protein localization to membrane protein localization to plasma membrane localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport to the plasma membrane protein transport macromolecule localization cellular process Golgi vesicle transport intracellular transport establishment of localization in cell intracellular protein transport protein localization to cell surface	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle trans-Golgi network cytoplasm intracellular vesicle cytoplasmic vesicle membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle trans-Golgi network cytoplasm intracellular vesicle cytoplasmic vesicle clathrin-coated vesicle coated vesicle vesicle endosome membrane early endosome endosome membrane early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002014	VHS domain	Domain
A, B	IPR008942	ENTH/VHS	Homologous Superfamily
A, B	IPR041198	N-terminal extension of GAT domain	Domain
A, B	IPR038425	GAT domain superfamily	Homologous Superfamily
A, B	IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Homologous Superfamily
A, B	IPR004152	GAT domain	Domain
A, B	IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Domain
A, B	IPR008153	Gamma-adaptin ear (GAE) domain	Domain
A, B	IPR027422	ADP-ribosylation factor-binding protein GGA1-3	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9UJY4	atypical teratoid rhabdoid tumor dermatomyositis large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm tuberculosis chronic obstructive pulmonary disease diabetes mellitus lung cancer nephrolithiasis ovarian cancer psoriasis Crohn ileitis exocrine pancreatic carcinoma atypical teratoid rhabdoid tumor dermatomyositis large cell medulloblastoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm tuberculosis chronic obstructive pulmonary disease diabetes mellitus lung cancer nephrolithiasis ovarian cancer psoriasis Crohn ileitis exocrine pancreatic carcinoma malignant mesothelioma non-small cell lung carcinoma pancreatic ductal adenocarcinoma subependymal giant cell astrocytoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	All alpha monotopic/peripheral	ENTH/VHS domain	VHS domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.