1M1H
Crystal structure of Aquifex aeolicus N-utilization substance G (NusG), Space group I222
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1m1ha1 | All beta proteins | N-utilization substance G protein NusG, insert domain | N-utilization substance G protein NusG, insert domain | N-utilization substance G protein NusG, insert domain | N-utilization substance G protein NusG, insert domain | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
A | d1m1ha2 | Alpha and beta proteins (a+b) | Ferredoxin-like | N-utilization substance G protein NusG, N-terminal domain | N-utilization substance G protein NusG, N-terminal domain | N-utilization substance G protein NusG, N-terminal domain | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | N-utilization substance G protein NusG, insert domain | 8030807 | 4002500 | SCOP2 (2022-06-29) |
A | SCOP2 Family | N-utilization substance G protein NusG, N-terminal domain-like | 8030810 | 4003239 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | N-utilization substance G protein NusG, insert domain | 8043186 | 3001341 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | N-utilization substance G protein NusG, N-terminal domain | 8043189 | 3000474 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NusG_II | e1m1hA1 | A: beta sandwiches | X: N-utilization substance G protein NusG, insert domain (From Topology) | H: N-utilization substance G protein NusG, insert domain (From Topology) | T: N-utilization substance G protein NusG, insert domain | F: NusG_II | ECOD (1.6) |
A | NusG | e1m1hA2 | A: a+b two layers | X: Alpha-beta plaits | H: N-utilization substance G protein NusG, N-terminal domain (From Topology) | T: N-utilization substance G protein NusG, N-terminal domain | F: NusG | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.940 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | NusG, N-terminal domain | CATH (4.3.0) |
A | 2.60.320.10 | Mainly Beta | Sandwich | mini-chromosome maintenance (MCM) complex, domain 2 | N-utilization substance G protein NusG, insert domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02357 | Transcription termination factor nusG (NusG) | Transcription termination factor nusG | - | Domain | |
PF07009 | NusG domain II (NusG_II) | NusG domain II | This domain is found in some NusG proteins where it forms domain II [1]. However most NusG proteins are missing this domain. In other cases this domain is found in isolation [2]. The function of this domain is unknown. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043425 | NusG-like | Family | |
IPR001062 | Transcription antitermination protein, NusG | Family | |
IPR036735 | NusG, N-terminal domain superfamily | Homologous Superfamily | |
IPR038690 | NusG, domain 2 superfamily | Homologous Superfamily | |
IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily | |
IPR015869 | Transcription antitermination protein, NusG, bacteria, conserved site | Conserved Site | |
IPR008991 | Translation protein SH3-like domain superfamily | Homologous Superfamily | |
IPR047050 | NusG, N-terminal | Domain | |
IPR024045 | NusG, domain 2 | Domain | |
IPR005824 | KOW | Domain | |
IPR006645 | NusG-like, N-terminal | Domain |