1LWU
Crystal structure of fragment D from lamprey fibrinogen complexed with the peptide Gly-His-Arg-Pro-amide
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2 Family | Fibrinogen C-terminal domain-like | 8029111 | 4002544 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Fibrinogen coiled-coil and central regions | 8029112 | 4003777 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Fibrinogen C-terminal domain-like | 8041490 | 3001395 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Fibrinogen coiled-coil and central regions | 8041491 | 3001470 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041491 | 3001470 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Fibrinogen C-terminal domain-like | 8041490 | 3001395 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Fibrinogen C-terminal domain-like | 8041490 | 3001395 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041491 | 3001470 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Fibrinogen C-terminal domain-like | 8041490 | 3001395 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041491 | 3001470 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041487 | 3001470 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041487 | 3001470 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041487 | 3001470 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Fibrinogen coiled-coil and central regions | 8029108 | 4003777 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Fibrinogen coiled-coil and central regions | 8041487 | 3001470 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Fibrinogen C-terminal domain-like | 8029107 | 4002544 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Fibrinogen coiled-coil and central regions | 8029110 | 4003777 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Fibrinogen C-terminal domain-like | 8041486 | 3001395 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Fibrinogen coiled-coil and central regions | 8041489 | 3001470 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Fibrinogen C-terminal domain-like | 8041486 | 3001395 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041489 | 3001470 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Fibrinogen C-terminal domain-like | 8041486 | 3001395 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041489 | 3001470 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Fibrinogen C-terminal domain-like | 8041486 | 3001395 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Fibrinogen coiled-coil and central regions | 8041489 | 3001470 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | Fibrinogen_C | e1lwuC1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
F | Fibrinogen_C | e1lwuF1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
L | Fibrinogen_C | e1lwuL1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
I | Fibrinogen_C | e1lwuI1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
B | Fibrinogen_C | e1lwuB1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
E | Fibrinogen_C | e1lwuE1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
H | Fibrinogen_C | e1lwuH1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
K | Fibrinogen_C | e1lwuK1 | A: a+b complex topology | X: Fibrinogen C-terminal domain-like (From Topology) | H: Fibrinogen C-terminal domain-like (From Topology) | T: Fibrinogen C-terminal domain-like | F: Fibrinogen_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037579 | Fibrinogen | Family | |
IPR012290 | Fibrinogen, alpha/beta/gamma chain, coiled coil domain | Domain | |
IPR002181 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain | Domain | |
IPR036056 | Fibrinogen-like, C-terminal | Homologous Superfamily | |
IPR014716 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 | Homologous Superfamily | |
IPR020837 | Fibrinogen, conserved site | Conserved Site | |
IPR037579 | Fibrinogen | Family | |
IPR012290 | Fibrinogen, alpha/beta/gamma chain, coiled coil domain | Domain | |
IPR037579 | Fibrinogen | Family | |
IPR012290 | Fibrinogen, alpha/beta/gamma chain, coiled coil domain | Domain | |
IPR002181 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain | Domain | |
IPR036056 | Fibrinogen-like, C-terminal | Homologous Superfamily | |
IPR014716 | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 | Homologous Superfamily | |
IPR020837 | Fibrinogen, conserved site | Conserved Site |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
NH2 | AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 :  L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 | :