1LQB
Crystal structure of a hydroxylated HIF-1 alpha peptide bound to the pVHL/elongin-C/elongin-B complex
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d1lqbc_ | All beta proteins | Prealbumin-like | VHL | VHL | VHL | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1lqba_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Elongin B | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1lqbb_ | Alpha and beta proteins (a+b) | POZ domain | POZ domain | BTB/POZ domain | Elongin C | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | VHL | 8041313 | 3000841 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | HIF-1alpha pVHL binding region-like | 8095959 | 3002714 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | VHL | e1lqbC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: VHL | ECOD (1.6) |
C | VHL_C | e1lqbC2 | A: alpha arrays | X: SOCS box-like (From Topology) | H: SOCS box-like (From Topology) | T: SOCS box-like | F: VHL_C | ECOD (1.6) |
A | ubiquitin_2 | e1lqbA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
B | Skp1_POZ_1 | e1lqbB1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 1.10.750.10 | Mainly Alpha | Orthogonal Bundle | Elongin C | Chain C, domain 1 | CATH (4.3.0) |
C | 2.60.40.780 | Mainly Beta | Sandwich | Immunoglobulin-like | von Hippel-Lindau disease tumour suppressor, beta domain | CATH (4.3.0) |
A | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
B | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17211 | VHL box domain (VHL_C) | VHL box domain | This domain represents the short C-terminal alpha helical domain from the VHL protein [1]. | Domain | |
PF01847 | VHL beta domain (VHL) | VHL beta domain | VHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |