1KRH
X-ray Structure of Benzoate Dioxygenase Reductase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Aromatic dioxygenase reductase-like | 8028207 | 4003789 | SCOP2 (2021-05-27) |
A | SCOP2 Family | 2Fe-2S ferredoxin domains from multidomain proteins | 8028209 | 4000241 | SCOP2 (2021-05-27) |
A | SCOP2 Family | Ferredoxin reductase FAD-binding domain-like | 8028205 | 4002840 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Ferredoxin reductase-like C-terminal NADP-linked domain | 8040586 | 3001461 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | 2Fe-2S ferredoxin-like | 8040588 | 3000113 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Riboflavin synthase domain-like | 8040584 | 3001812 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Ferredoxin reductase-like C-terminal NADP-linked domain | 8040586 | 3001461 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Riboflavin synthase domain-like | 8040584 | 3001812 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8040588 | 3000113 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00970 | e1krhA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00970 | ECOD (1.6) |
A | PF00111 | e1krhA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00111 | ECOD (1.6) |
A | PF00175 | e1krhA3 | A: a/b three-layered sandwiches | X: Ferredoxin reductase-like, C-terminal NADP-linked domain (From Topology) | H: Ferredoxin reductase-like, C-terminal NADP-linked domain (From Topology) | T: Ferredoxin reductase-like, C-terminal NADP-linked domain | F: PF00175 | ECOD (1.6) |
B | PF00970 | e1krhB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00970 | ECOD (1.6) |
B | PF00111 | e1krhB2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00111 | ECOD (1.6) |
B | PF00175 | e1krhB3 | A: a/b three-layered sandwiches | X: Ferredoxin reductase-like, C-terminal NADP-linked domain (From Topology) | H: Ferredoxin reductase-like, C-terminal NADP-linked domain (From Topology) | T: Ferredoxin reductase-like, C-terminal NADP-linked domain | F: PF00175 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
A | 2.40.30.10 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
A | 3.40.50.80 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | CATH (4.3.0) |
B | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
B | 2.40.30.10 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
B | 3.40.50.80 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00175 | Oxidoreductase NAD-binding domain (NAD_binding_1) | Oxidoreductase NAD-binding domain | Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. | Domain | |
PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain | |
PF00970 | Oxidoreductase FAD-binding domain (FAD_binding_6) | Oxidoreductase FAD-binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001709 | Flavoprotein pyridine nucleotide cytochrome reductase | Domain | |
IPR001433 | Oxidoreductase FAD/NAD(P)-binding | Domain | |
IPR036010 | 2Fe-2S ferredoxin-like superfamily | Homologous Superfamily | |
IPR001041 | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Domain | |
IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site | Binding Site | |
IPR039261 | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Homologous Superfamily | |
IPR008333 | Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain | Domain | |
IPR017938 | Riboflavin synthase-like beta-barrel | Homologous Superfamily | |
IPR017927 | FAD-binding domain, ferredoxin reductase-type | Domain | |
IPR017896 | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | Domain | |
IPR047683 | Benzoate 1,2-dioxygenase reductase, FAD/NAD binding domain | Domain | |
IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily |