1KON | pdb_00001kon

CRYSTAL STRUCTURE OF E.COLI YEBC

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1kona_	Multi-domain proteins (alpha and beta)	YebC-like	YebC-like	YebC-like	Hypothetical protein YebC	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TACO1-like	8028151	4002873	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TACO1 C-terminal domain-like	8040530	3001835	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homeodomain-like	8054409	3000001	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NTP_transferase	e1konA10	A: alpha arrays	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: NTP_transferase	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
A	3.30.70.980	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	YebC, transcriptional regulation domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF20772	TACO1/YebC protein N-terminal domain (TACO1_YebC_N)	TACO1/YebC protein N-terminal domain	This entry represents the N-terminal helical bundle domain from proteins in the TACO1/YebC family which are thought to act as transcriptional regulators. In mammals, The TACO1 protein activates the translation of mitochondrially-encoded COX1 [2,4]. I ...	This entry represents the N-terminal helical bundle domain from proteins in the TACO1/YebC family which are thought to act as transcriptional regulators. In mammals, The TACO1 protein activates the translation of mitochondrially-encoded COX1 [2,4]. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region [3].	Domain
A	PF01709	TACO1/YebC second and third domain (Transcrip_reg)	TACO1/YebC second and third domain	This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1 [2]. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region [3]. This ent ...	This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1 [2]. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region [3]. This entry represents the second and third domains in this protein, with one domain nested within the other.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein yebC	DNA binding binding nucleic acid binding	response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
A	IPR048300	TACO1/YebC-like, second and third domains	Domain
A	IPR049083	TACO1/YebC-like, N-terminal domain	Domain
A	IPR002876	Transcriptional regulator TACO1-like	Family
A	IPR029072	YebC-like	Homologous Superfamily
A	IPR026564	Transcriptional regulator TACO1-like, domain 3	Homologous Superfamily