Annotations: 1KHR

Crystal Structure of Vat(D) in Complex with Virginiamycin and Coenzyme A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
AMR Gene: CARD Annotation
AMR Gene Family: CARD Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1khrf_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Galactoside acetyltransferase-like	Xenobiotic acetyltransferase	(Enterococcus faecium ) [TaxId: 1352 ],	SCOPe (2.08)
E	d1khre_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Galactoside acetyltransferase-like	Xenobiotic acetyltransferase	(Enterococcus faecium ) [TaxId: 1352 ],	SCOPe (2.08)
D	d1khrd_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Galactoside acetyltransferase-like	Xenobiotic acetyltransferase	(Enterococcus faecium ) [TaxId: 1352 ],	SCOPe (2.08)
C	d1khrc_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Galactoside acetyltransferase-like	Xenobiotic acetyltransferase	(Enterococcus faecium ) [TaxId: 1352 ],	SCOPe (2.08)
B	d1khrb_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Galactoside acetyltransferase-like	Xenobiotic acetyltransferase	(Enterococcus faecium ) [TaxId: 1352 ],	SCOPe (2.08)
A	d1khra_	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Galactoside acetyltransferase-like	Xenobiotic acetyltransferase	(Enterococcus faecium ) [TaxId: 1352 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8036503	3001804	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8036503	3001804	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8036503	3001804	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8036503	3001804	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8036503	3001804	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8036503	3001804	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Hexapep, GMPPB_C	e1khrF1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Hexapep, GMPPB_C	ECOD (v295.2)
E	Hexapep, GMPPB_C	e1khrE1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Hexapep, GMPPB_C	ECOD (v295.2)
D	Hexapep, GMPPB_C	e1khrD1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Hexapep, GMPPB_C	ECOD (v295.2)
C	Hexapep, GMPPB_C	e1khrC1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Hexapep, GMPPB_C	ECOD (v295.2)
B	Hexapep, GMPPB_C	e1khrB1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Hexapep, GMPPB_C	ECOD (v295.2)
A	Hexapep, GMPPB_C	e1khrA1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Hexapep, GMPPB_C	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
E	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
D	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
C	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
B	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
A	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)

AMR Gene: CARD Annotation CARD Database Homepage

Chains	Accession	Short Name	Description	Provenance Source (Version)
A, B, C, D, E A, B, C, D, E, F	ARO:3002843	vatD	vatD is a transposon-mediated acetyltransferase found in Enterococcus faecium.	CARD (4.0.2)

AMR Gene Family: CARD Annotation CARD Database Homepage

Chains	Accession	Gene Family	Drug Class	Resistance Machanism	Provenance Source (Version)
A, B, C, D, E A, B, C, D, E, F	ARO:3000453	streptogramin vat acetyltransferase	streptogramin antibiotic	antibiotic inactivation	CARD (4.0.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	STREPTOGRAMIN A ACETYLTRANSFERASE	transferase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR018357	Hexapeptide transferase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR050179	Transferase hexapeptide repeat	Family
A, B, C, D, E A, B, C, D, E, F	IPR001451	Hexapeptide repeat	Repeat