Annotations: 1JOE

Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1joed_	Alpha and beta proteins (a+b)	LuxS/MPP-like metallohydrolase	LuxS/MPP-like metallohydrolase	Autoinducer-2 production protein LuxS	Autoinducer-2 production protein LuxS	(Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ],	SCOPe (2.08)
C	d1joec_	Alpha and beta proteins (a+b)	LuxS/MPP-like metallohydrolase	LuxS/MPP-like metallohydrolase	Autoinducer-2 production protein LuxS	Autoinducer-2 production protein LuxS	(Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ],	SCOPe (2.08)
B	d1joeb_	Alpha and beta proteins (a+b)	LuxS/MPP-like metallohydrolase	LuxS/MPP-like metallohydrolase	Autoinducer-2 production protein LuxS	Autoinducer-2 production protein LuxS	(Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ],	SCOPe (2.08)
A	d1joea_	Alpha and beta proteins (a+b)	LuxS/MPP-like metallohydrolase	LuxS/MPP-like metallohydrolase	Autoinducer-2 production protein LuxS	Autoinducer-2 production protein LuxS	(Haemophilus influenzae Rd KW20 ) [TaxId: 71421 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	LuxS/MPP-like metallohydrolase	8034179	3001831	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	LuxS/MPP-like metallohydrolase	8034179	3001831	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	LuxS/MPP-like metallohydrolase	8034179	3001831	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	LuxS/MPP-like metallohydrolase	8034179	3001831	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Peptidase_M16	e1joeD1	A: beta barrels	X: ETN0001 domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Peptidase_M16	ECOD (v294.2)
C	Peptidase_M16	e1joeC1	A: beta barrels	X: ETN0001 domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Peptidase_M16	ECOD (v294.2)
B	Peptidase_M16	e1joeB1	A: beta barrels	X: ETN0001 domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Peptidase_M16	ECOD (v294.2)
A	Peptidase_M16	e1joeA1	A: beta barrels	X: ETN0001 domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: Peptidase_M16	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1360.80	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
C	3.30.1360.80	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
B	3.30.1360.80	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)
A	3.30.1360.80	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	AUTOINDUCER-2 PRODUCTION PROTEIN	carbon-sulfur lyase activity S-ribosylhomocysteine lyase activity lyase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	regulation of biological process response to stimulus signaling quorum sensing biological regulation cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003815	S-ribosylhomocysteinase (LuxS)	Family
A, B, C, D	IPR011249	Metalloenzyme, LuxS/M16 peptidase-like	Homologous Superfamily
A, B, C, D	IPR037005	S-ribosylhomocysteinase (LuxS) superfamily	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.