Annotations: 1JNB

CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1jnbd_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
E	d1jnbe_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
F	d1jnbf_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
L	d1jnbl_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
K	d1jnbk_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
J	d1jnbj_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
I	d1jnbi_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
H	d1jnbh_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
G	d1jnbg_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
C	d1jnbc_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
B	d1jnbb_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
A	d1jnba_	Multi-domain proteins (alpha and beta)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	Upper collar protein gp10 (connector protein)	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Upper collar protein gp10 (connector protein)	8036294	3001932	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DUF1684	e1jnbD1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
E	DUF1684	e1jnbE1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
F	DUF1684	e1jnbF1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
L	DUF1684	e1jnbL1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
K	DUF1684	e1jnbK1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
J	DUF1684	e1jnbJ1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
I	DUF1684	e1jnbI1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
H	DUF1684	e1jnbH1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
G	DUF1684	e1jnbG1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
C	DUF1684	e1jnbC1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
B	DUF1684	e1jnbB1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)
A	DUF1684	e1jnbA1	A: beta barrels	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DUF1684	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
D	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
D	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
E	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
E	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
E	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
F	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
F	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
F	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
L	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
L	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
L	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
K	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
K	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
K	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
J	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
J	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
J	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
I	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
I	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
I	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
H	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
H	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
H	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
G	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
G	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
G	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
C	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
C	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
C	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
B	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
B	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
B	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)
A	1.10.246.30	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
A	2.40.500.10	Mainly Beta	Beta Barrel	Upper collar protein gp10 (connector protein) fold	Upper collar protein gp10 (connector protein)	CATH (4.3.0)
A	3.30.1350.20	Alpha Beta	2-Layer Sandwich	Crambin	Bacteriophage PHI-29 conector. Domain 3	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	UPPER COLLAR PROTEIN	RNA binding binding nucleic acid binding	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction	viral procapsid virion component protein-containing complex viral capsid viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008016	Portal protein Gp10	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036199	Portal protein Gp10 superfamily	Homologous Superfamily