1JDE
K22A mutant of pyruvate, phosphate dikinase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1jdea1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Phosphoenolpyruvate/pyruvate domain | Pyruvate phosphate dikinase, C-terminal domain | Pyruvate phosphate dikinase, C-terminal domain | ([Clostridium] symbiosum ) [TaxId: 1512 ], | SCOPe (2.08) |
A | d1jdea2 | Alpha and beta proteins (a/b) | The 'swivelling' beta/beta/alpha domain | Phosphohistidine domain | Pyruvate phosphate dikinase, central domain | Pyruvate phosphate dikinase, central domain | ([Clostridium] symbiosum ) [TaxId: 1512 ], | SCOPe (2.08) |
A | d1jdea3 | Alpha and beta proteins (a+b) | ATP-grasp | Glutathione synthetase ATP-binding domain-like | Pyruvate phosphate dikinase, N-terminal domain | Pyruvate phosphate dikinase, N-terminal domain | ([Clostridium] symbiosum ) [TaxId: 1512 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8037995 | 3000094 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8037990 | 3000510 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Phosphohistidine domain | 8037992 | 3000933 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PPDK_N | e1jdeA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PPDK_N | ECOD (1.6) |
A | PEP-utilizers_C | e1jdeA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PEP-utilizers_C | ECOD (1.6) |
A | PEP-utilizers | e1jdeA3 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PEP-utilizers | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
A | 1.10.189.10 | Mainly Alpha | Orthogonal Bundle | Pyruvate Phosphate di-kinase | domain 2 | CATH (4.3.0) |
A | 3.50.30.10 | Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase | domain 1 | CATH (4.3.0) |
A | 3.20.20.60 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Phosphoenolpyruvate-binding domains | CATH (4.3.0) |
A | 1.20.80.30 | Mainly Alpha | Up-down Bundle | Acyl-CoA Binding Protein | CATH (4.3.0) | |
A | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01326 | Pyruvate phosphate dikinase, AMP/ATP-binding domain (PPDK_N) | Pyruvate phosphate dikinase, AMP/ATP-binding domain | - | Family | |
PF00391 | PEP-utilising enzyme, mobile domain (PEP-utilizers) | PEP-utilising enzyme, mobile domain | This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it. | Domain | |
PF02896 | PEP-utilising enzyme, PEP-binding domain (PEP-utilizers_C) | PEP-utilising enzyme, PEP-binding domain | This entry represents a TIM barrel domain found at the C terminus of a number of PEP (phosphoenolpyruvate)-utilising proteins. In PPDK (Pyruvate phosphate dikinase) this C-terminal domain has been shown to be a PEP-binding domain [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015813 | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | Homologous Superfamily | |
IPR008279 | PEP-utilising enzyme, mobile domain | Domain | |
IPR018274 | PEP-utilising enzyme, active site | Active Site | |
IPR010121 | Pyruvate, phosphate dikinase | Family | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR023151 | PEP-utilising enzyme, conserved site | Conserved Site | |
IPR036637 | Phosphohistidine domain superfamily | Homologous Superfamily | |
IPR002192 | Pyruvate phosphate dikinase, AMP/ATP-binding | Domain | |
IPR040442 | Pyruvate kinase-like domain superfamily | Homologous Superfamily | |
IPR000121 | PEP-utilising enzyme, C-terminal | Domain |