1J9I
STRUCTURE OF THE DNA BINDING DOMAIN OF THE GPNU1 SUBUNIT OF LAMBDA TERMINASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1j9ia_ | All alpha proteins | Putative DNA-binding domain | Putative DNA-binding domain | Terminase gpNU1 subunit domain | Terminase gpNU1 subunit domain | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
B | d1j9ib_ | All alpha proteins | Putative DNA-binding domain | Putative DNA-binding domain | Terminase gpNU1 subunit domain | Terminase gpNU1 subunit domain | (Lambdavirus lambda ) [TaxId: 10710 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Terminase gpNU1 subunit domain | 8027498 | 4001904 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Putative DNA-binding domain | 8039877 | 3000158 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Putative DNA-binding domain | 8039877 | 3000158 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Phage_Nu1 | e1j9iA1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: Phage_Nu1 | ECOD (1.6) |
B | Phage_Nu1 | e1j9iB1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: Phage_Nu1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07471 | Phage DNA packaging protein Nu1 (Phage_Nu1) | Phage DNA packaging protein Nu1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009061 | Putative DNA-binding domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR010906 | Bacteriophage lambda, Nu1, terminase small subunit | Family |