1J5N
Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex with SRY DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1j5na_ | All alpha proteins | HMG-box | HMG-box | HMG-box | NHP6a | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | HMG-box | 8043129 | 3001368 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | PF00505 | e1j5nA1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: PF00505 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF00505 | HMG (high mobility group) box (HMG_box) | HMG (high mobility group) box | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR050342 | High Mobility Group Box (HMGB) | Family |
C [auth A] | IPR009071 | High mobility group box domain | Domain |
C [auth A] | IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |