1HUO
CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F [auth B] | SCOP2B Superfamily | PsbU/PolX domain-like | 8042124 | 3000893 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | DNA polymerase beta, N-terminal domain-like | 8033321 | 3000524 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Nucleotidyltransferase-like | 8042125 | 3000129 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | DNA polymerase beta, N-terminal domain-like | 8033321 | 3000524 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Nucleotidyltransferase-like | 8042125 | 3000129 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | PsbU/PolX domain-like | 8042124 | 3000893 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth B] | DNA_pol_lambd_f | e1huoB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: DNA_pol_lambd_f | ECOD (1.6) |
F [auth B] | HHH_8 | e1huoB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_8 | ECOD (1.6) |
F [auth B] | DNA_pol_B_palm | e1huoB3 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol_B_palm | ECOD (1.6) |
E [auth A] | DNA_pol_lambd_f | e1huoA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: DNA_pol_lambd_f | ECOD (1.6) |
E [auth A] | HHH_8 | e1huoA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_8 | ECOD (1.6) |
E [auth A] | DNA_pol_B_palm | e1huoA3 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol_B_palm | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
F [auth B] | 1.10.150.110 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth B] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth B] | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
F [auth B] | 3.30.210.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 3 | CATH (4.3.0) |
E [auth A] | 1.10.150.110 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
E [auth A] | 1.10.150.20 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
E [auth A] | 3.30.460.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 2 | CATH (4.3.0) |
E [auth A] | 3.30.210.10 | Alpha Beta | 2-Layer Sandwich | Beta Polymerase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B] | PF14716 | Helix-hairpin-helix domain (HHH_8) | Helix-hairpin-helix domain | - | Domain |
E [auth A], F [auth B] | PF14791 | DNA polymerase beta thumb (DNA_pol_B_thumb) | DNA polymerase beta thumb | - | Family |
E [auth A], F [auth B] | PF14792 | DNA polymerase beta palm (DNA_pol_B_palm) | DNA polymerase beta palm | The catalytic region of DNA polymerase beta is split into three domains. An N-terminal fingers domain, a central palm domain and a C-terminal thumb domain. This entry represents the palm domain [1]. | Domain |
E [auth A], F [auth B] | PF10391 | Fingers domain of DNA polymerase lambda (DNA_pol_lambd_f) | Fingers domain of DNA polymerase lambda | DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the centr ... | Domain |