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 1HJ5 | pdb_00001hj5

Cytochrome cd1 Nitrite Reductase, reoxidised enzyme

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1hj5b1 All alpha proteins Cytochrome c Cytochrome c N-terminal (heme c) domain of cytochrome cd1-nitrite reductase N-terminal (heme c) domain of cytochrome cd1-nitrite reductase (Paracoccus pantotrophus ) [TaxId: 82367 ], SCOPe (2.08)
Bd1hj5b2 All beta proteins 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase (Paracoccus pantotrophus ) [TaxId: 82367 ], SCOPe (2.08)
Ad1hj5a1 All alpha proteins Cytochrome c Cytochrome c N-terminal (heme c) domain of cytochrome cd1-nitrite reductase N-terminal (heme c) domain of cytochrome cd1-nitrite reductase (Paracoccus pantotrophus ) [TaxId: 82367 ], SCOPe (2.08)
Ad1hj5a2 All beta proteins 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase (Paracoccus pantotrophus ) [TaxId: 82367 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCytochrome c 8042235 3000815 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 8042236 3001509 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 8042236 3001509 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c 8042235 3000815 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BEnd_tail_spikee1hj5B1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: End_tail_spikeECOD (v295.2)
BMgsA_Ce1hj5B2 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: MgsA_CECOD (v295.2)
AEnd_tail_spikee1hj5A1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: End_tail_spikeECOD (v295.2)
AMgsA_Ce1hj5A2 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: MgsA_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
B2.140.10.20 Mainly Beta 8 Propeller Methanol Dehydrogenase Chain ACATH (4.3.0)
A1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
A2.140.10.20 Mainly Beta 8 Propeller Methanol Dehydrogenase Chain ACATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Nitrite reductase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
A, B
IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
A, B
IPR009056Cytochrome c-like domainDomain
A, B
IPR003143Cytochrome cd1-nitrite reductase, C-terminal domain superfamilyHomologous Superfamily