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1HHV
SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification
SCOP-e Database Homepage
Chains
Domain Info
Class
Fold
Superfamily
Family
Domain
Species
Provenance Source (Version)
A
d1hhva_
Alpha and beta proteins (a+b)
IL8-like
Interleukin 8-like chemokines
Interleukin 8-like chemokines
Macrophage inflammatory protein, MIP
(
) [TaxId:
],
(
Human herpesvirus 8 type P (isolate GK18)
) [TaxId:
868565
],
SCOPe (2.08)
Domain Annotation: SCOP2 Classification
SCOP2 Database Homepage
Chains
Type
Family Name
Domain Identifier
Family Identifier
Provenance Source (Version)
A
SCOP2B Superfamily
Interleukin 8-like chemokines
8040942
3001955
SCOP2B (2022-06-29)
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
IL8
e1hhvA1
A: beta barrels
X: IL8-related (From Homology)
H: IL8-related
T: IL8
F: IL8
ECOD (1.6)
Domain Annotation: CATH
CATH Database Homepage
Chain
Domain
Class
Architecture
Topology
Homology
Provenance Source (Version)
A
2.40.50.40
Mainly Beta
Beta Barrel
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
CATH (4.3.0)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF00048
Small cytokines (intecrine/chemokine), interleukin-8 like (IL8)
Small cytokines (intecrine/chemokine), interleukin-8 like
Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds.
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
VIRUS CHEMOKINE VMIP-II
binding
molecular function activator activity
signaling receptor binding
G protein-coupled receptor binding
signaling receptor activator activity
protein binding
cytokine receptor binding
chemokine activity
molecular function regulator activity
cytokine activity
signaling receptor regulator activity
chemokine receptor binding
receptor ligand activity
CXCR chemokine receptor binding
cell chemotaxis
cellular response to stimulus
eosinophil chemotaxis
chemotaxis
response to stimulus
response to external stimulus
granulocyte migration
leukocyte migration
cellular response to chemical stimulus
eosinophil migration
taxis
immune system process
granulocyte chemotaxis
response to chemical
myeloid leukocyte migration
cell chemotaxis
cellular response to stimulus
eosinophil chemotaxis
chemotaxis
response to stimulus
response to external stimulus
granulocyte migration
leukocyte migration
cellular response to chemical stimulus
eosinophil migration
taxis
immune system process
granulocyte chemotaxis
response to chemical
myeloid leukocyte migration
cell migration
cellular process
cell motility
leukocyte chemotaxis
locomotion
immune response
Less
extracellular region
extracellular space
cellular anatomical entity
protein-containing complex
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR001811
Chemokine interleukin-8-like domain
Domain
A
IPR039809
Chemokine beta/gamma/delta
Family
A
IPR036048
Chemokine interleukin-8-like superfamily
Homologous Superfamily
A
IPR000827
CC chemokine, conserved site
Conserved Site
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