1H64
CRYSTAL STRUCTURE OF THE SM-RELATED PROTEIN OF P. ABYSSI: THE BIOLOGICAL UNIT IS A HEPTAMER
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
AA [auth Y] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
B [auth 2] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
BA [auth Z] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2 Family | Sm motif of small nuclear ribonucleoproteins, SNRNP | 8030043 | 4001809 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
J [auth H] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
K [auth I] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
L [auth J] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
M [auth K] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
N [auth L] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Q [auth O] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
R [auth P] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
S [auth Q] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
U [auth S] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
V [auth T] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
W [auth U] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Y [auth W] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Z [auth X] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
O [auth M] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
P [auth N] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
T [auth R] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
X [auth V] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8042422 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | LSM | e1h6411 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
AA [auth Y] | LSM | e1h64Y1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
B [auth 2] | LSM | e1h6421 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
BA [auth Z] | LSM | e1h64Z1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
C [auth A] | LSM | e1h64A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
D [auth B] | LSM | e1h64B1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
E [auth C] | LSM | e1h64C1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
F [auth D] | LSM | e1h64D1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
H [auth F] | LSM | e1h64F1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
I [auth G] | LSM | e1h64G1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
J [auth H] | LSM | e1h64H1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
K [auth I] | LSM | e1h64I1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
L [auth J] | LSM | e1h64J1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
M [auth K] | LSM | e1h64K1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
N [auth L] | LSM | e1h64L1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Q [auth O] | LSM | e1h64O1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
R [auth P] | LSM | e1h64P1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
S [auth Q] | LSM | e1h64Q1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
U [auth S] | LSM | e1h64S1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
V [auth T] | LSM | e1h64T1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
W [auth U] | LSM | e1h64U1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Y [auth W] | LSM | e1h64W1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Z [auth X] | LSM | e1h64X1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
G [auth E] | LSM | e1h64E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
O [auth M] | LSM | e1h64M1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
P [auth N] | LSM | e1h64N1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
T [auth R] | LSM | e1h64R1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
X [auth V] | LSM | e1h64V1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001163 | Sm domain, eukaryotic/archaea-type | Domain | |
IPR016487 | Sm-like protein Lsm6/SmF | Family | |
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR047575 | Sm domain | Domain | |
IPR022901 | snRNP Sm-like, putative, archaea | Family |