1H3G
Cyclomaltodextrinase from Flavobacterium sp. No. 92: from DNA sequence to protein structure
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | alpha-Amylases, C-terminal beta-sheet domain | 8023445 | 4002636 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Amylase, catalytic domain | 8023449 | 4003138 | SCOP2 (2022-06-29) |
A | SCOP2 Family | E-set domains of sugar-utilizing enzymes | 8054930 | 4007565 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glycosyl hydrolase domain-like | 8035825 | 3001528 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | (Trans)glycosidases | 8035829 | 3000313 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | E set domains | 8054931 | 3000070 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | E set domains | 8054931 | 3000070 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8035825 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | (Trans)glycosidases | 8035829 | 3000313 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cyc-maltodext_N | e1h3gA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cyc-maltodext_N | ECOD (1.6) |
A | Cyc-maltodext_C | e1h3gA2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Cyc-maltodext_C | ECOD (1.6) |
A | Alpha-amylase | e1h3gA3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
B | Cyc-maltodext_N | e1h3gB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Cyc-maltodext_N | ECOD (1.6) |
B | Cyc-maltodext_C | e1h3gB2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Cyc-maltodext_C | ECOD (1.6) |
B | Alpha-amylase | e1h3gB3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
B | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF09087 | Cyclomaltodextrinase, N-terminal (Cyc-maltodext_N) | Cyclomaltodextrinase, N-terminal | Members of this family assume a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N terminal domain to a distal domain in the protein. This domain p ... | Domain | |
PF10438 | Cyclo-malto-dextrinase C-terminal domain (Cyc-maltodext_C) | Cyclo-malto-dextrinase C-terminal domain | This domain is at the very C-terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the acitve sites created by upstream domains, Cyc-maltodext_N Pfam:PF09087, and Alpha-amylase P ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Cyclomaltodextrinase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015171 | Cyclomaltodextrinase, N-terminal | Domain | |
IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR019492 | Cyclo-malto-dextrinase, C-terminal | Domain | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |