Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1h0ma1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Ad1h0ma2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Bd1h0mb1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Bd1h0mb2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Cd1h0mc1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Cd1h0mc2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Dd1h0md1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)
Dd1h0md2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens (Agrobacterium tumefaciens ) [TaxId: 358 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPheromone-binding domain of LuxR-like quorum-sensing transcription factors 8041024 3001697 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-terminal effector domain of the bipartite response regulators 8041021 3001179 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-terminal effector domain of the bipartite response regulators 8041021 3001179 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPheromone-binding domain of LuxR-like quorum-sensing transcription factors 8041024 3001697 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPheromone-binding domain of LuxR-like quorum-sensing transcription factors 8041024 3001697 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyC-terminal effector domain of the bipartite response regulators 8041021 3001179 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyC-terminal effector domain of the bipartite response regulators 8041021 3001179 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPheromone-binding domain of LuxR-like quorum-sensing transcription factors 8041024 3001697 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGerEe1h0mA1 A: alpha arraysX: HTHH: HTHT: tetra-helical, LuxR-likeF: GerEECOD (1.6)
AAutoind_binde1h0mA2 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: Autoind_bindECOD (1.6)
BGerEe1h0mB1 A: alpha arraysX: HTHH: HTHT: tetra-helical, LuxR-likeF: GerEECOD (1.6)
BAutoind_binde1h0mB2 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: Autoind_bindECOD (1.6)
CGerEe1h0mC1 A: alpha arraysX: HTHH: HTHT: tetra-helical, LuxR-likeF: GerEECOD (1.6)
CAutoind_binde1h0mC2 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: Autoind_bindECOD (1.6)
DGerEe1h0mD1 A: alpha arraysX: HTHH: HTHT: tetra-helical, LuxR-likeF: GerEECOD (1.6)
DAutoind_binde1h0mD2 A: a+b three layersX: Profilin-likeH: sensor domains (From Topology)T: sensor domainsF: Autoind_bindECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF03472Autoinducer binding domain (Autoind_bind)Autoinducer binding domainThis domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 20 ...This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules (N-Acyl homoserine lactones, chlorolactone and rosmarinic acid) (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Domain
A, B, C, D
PF00196Bacterial regulatory proteins, luxR family (GerE)Bacterial regulatory proteins, luxR family- Domain