NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1goga1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | E-set domains of sugar-utilizing enzymes | Galactose oxidase, C-terminal domain | (Hypomyces rosellus ) [TaxId: 5132 ], | SCOPe (2.08) |
| A | d1goga2 | All beta proteins | Galactose-binding domain-like | Galactose-binding domain-like | Galactose-binding domain | Galactose oxidase, N-terminal domain | (Hypomyces rosellus ) [TaxId: 5132 ], | SCOPe (2.08) |
| A | d1goga3 | All beta proteins | 7-bladed beta-propeller | Galactose oxidase, central domain | Galactose oxidase, central domain | Galactose oxidase, central domain | (Hypomyces rosellus ) [TaxId: 5132 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | Galactose oxidase, central domain | 8042844 | 3001660 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | galactose-binding domain-like | 8041133 | 3000087 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | E set domains | 8054887 | 3000070 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | CBM27 | e1gogA1 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: CBM27 | ECOD (v294.2) |
| A | Copper-bind | e1gogA2 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (v294.2) |
| A | FG-GAP, FG-GAP_3 | e1gogA3 | A: beta barrels | X: Phage tail fiber protein trimerization domain | H: Phage tail fiber protein trimerization domain | T: Phage tail fiber protein trimerization domain | F: FG-GAP, FG-GAP_3 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
| A | 2.130.10.80 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| GALACTOSE OXIDASE | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009880 | Glyoxal oxidase, N-terminal | Domain | |
| IPR000421 | Coagulation factor 5/8, C-terminal domain | Domain | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR015202 | Galactose oxidase-like, Early set domain | Domain | |
| IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
| IPR037293 | Galactose oxidase, central domain superfamily | Homologous Superfamily | |
| IPR006652 | Kelch repeat type 1 | Repeat | |
| IPR011043 | Galactose oxidase/kelch, beta-propeller | Homologous Superfamily | |
| IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| galactose oxidiase M-CSA #322 | Galactose oxidase is a copper containing enzyme which oxidises primary alcohols to aldehydes by the reduction of molecular oxygen to hydrogen peroxide. The enzyme catalyses the oxidation of many substrates, including dihydroxyacetone, small molecules and olysaccharides by use of a protein radical cofactor, a novel metalloradical complex, formed by a unique structural feature at the copper site with a novel thioether bond linking Cys 228 and Tyr 272 formed from a post-translational modification, which is in a stacking interaction with Trp 290. Galactose oxidase is remarkable in the extent to which free radicals are involved in all aspects of the enzyme function: serving as a key feature of the active site structure, defining the characteristic reactivity of the complex, and directing the biogenesis of the Tyr-Cys cofactor during protein maturation. | Defined by 6 residues: CYS:A-228TYR:A-272TRP:A-290TYR:A-495HIS:A-496HIS:A-581 | EC: 1.1.3.9 (PDB Primary Data) |














