1FWJ | pdb_00001fwj

KLEBSIELLA AEROGENES UREASE, NATIVE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1fwjc1	All beta proteins	Composite domain of metallo-dependent hydrolases	Composite domain of metallo-dependent hydrolases	alpha-Subunit of urease	alpha-Subunit of urease	(Klebsiella aerogenes ) [TaxId: 548 ],	SCOPe (2.08)
C	d1fwjc2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	alpha-subunit of urease, catalytic domain	alpha-subunit of urease, catalytic domain	(Klebsiella aerogenes ) [TaxId: 548 ],	SCOPe (2.08)
B	d1fwjb_	All beta proteins	beta-clip	Urease, beta-subunit	Urease, beta-subunit	Urease, beta-subunit	(Klebsiella aerogenes ) [TaxId: 548 ],	SCOPe (2.08)
A	d1fwja_	Alpha and beta proteins (a+b)	Urease, gamma-subunit	Urease, gamma-subunit	Urease, gamma-subunit	Urease, gamma-subunit	(Klebsiella aerogenes ) [TaxId: 548 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Metallo-dependent hydrolases	8043413	3000428	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8043160	3000176	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8043160	3000176	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Metallo-dependent hydrolases	8043413	3000428	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Urease, beta-subunit	8044423	3001949	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Urease, gamma-subunit	8044422	3001945	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Rhv	e1fwjC1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
C	NAD_binding_3	e1fwjC2	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)
B	Ldl_recept_b	e1fwjB1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Ldl_recept_b	ECOD (v295.2)
A	Urease_gamma	e1fwjA1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Urease_gamma	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
C	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
B	2.10.150.10	Mainly Beta	Ribbon	Urease, subunit B	Urease, beta subunit	CATH (4.3.0)
A	3.30.280.10	Alpha Beta	2-Layer Sandwich	Urease	subunit A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	UREASE	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity urease activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding	nitrogen cycle metabolic process catabolic process small molecule metabolic process metabolic process cellular process urea catabolic process small molecule catabolic process urea metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
B	UREASE	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity urease activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	nitrogen cycle metabolic process catabolic process small molecule metabolic process metabolic process cellular process urea catabolic process small molecule catabolic process urea metabolic process	protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm urease complex
A	UREASE	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity urease activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding	nitrogen cycle metabolic process catabolic process small molecule metabolic process metabolic process cellular process urea catabolic process small molecule catabolic process urea metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR011612	Urease alpha-subunit, N-terminal domain	Domain
C	IPR029754	Urease nickel binding site	Binding Site
C	IPR017950	Urease active site	Active Site
C	IPR005848	Urease, alpha subunit	Family
C	IPR006680	Amidohydrolase-related	Domain
C	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
C	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
C	IPR017951	Urease alpha subunit, C-terminal	Domain
B	IPR002019	Urease, beta subunit-like	Family
B	IPR050069	Urease subunit	Family
B	IPR036461	Urease, beta subunit superfamily	Homologous Superfamily
A	IPR050069	Urease subunit	Family
A	IPR012010	Urease, gamma subunit	Family
A	IPR002026	Urease, gamma/gamma-beta subunit	Family
A	IPR036463	Urease, gamma subunit superfamily	Homologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
C	urease M-CSA #87	Ureases hydrolyse urea into ammonia and carbamate. Ureases have been isolated from a wide range of bacteria, fungi and higher plants where it allows the organism to use urea as a nitrogen source. Ureases uses an almost unique bi-nickel catalytic centre which is liganded by a carbamylated lysine. The mechanism of this enzyme has been subject to debate since the early 1920s and the precise steps in catalysis remain unclear [PMID:20471401].	Defined by 10 residues: HIS:C-134HIS:C-136LYS:C-217HIS:C-219ASP:C-221HIS:C-246HIS:C-272HIS:C-320ARG:C-336ASP:C-360 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.5.1.5 (PDB Primary Data) Search M-CSA Motif + EC 3.5.1.5