1FWG
KLEBSIELLA AEROGENES UREASE, C319S VARIANT
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d1fwgb_ | All beta proteins | beta-clip | Urease, beta-subunit | Urease, beta-subunit | Urease, beta-subunit | (Klebsiella aerogenes ) [TaxId: 548 ], | SCOPe (2.08) |
A | d1fwga_ | Alpha and beta proteins (a+b) | Urease, gamma-subunit | Urease, gamma-subunit | Urease, gamma-subunit | Urease, gamma-subunit | (Klebsiella aerogenes ) [TaxId: 548 ], | SCOPe (2.08) |
C | d1fwgc1 | All beta proteins | Composite domain of metallo-dependent hydrolases | Composite domain of metallo-dependent hydrolases | alpha-Subunit of urease | alpha-Subunit of urease | (Klebsiella aerogenes ) [TaxId: 548 ], | SCOPe (2.08) |
C | d1fwgc2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | alpha-subunit of urease, catalytic domain | alpha-subunit of urease, catalytic domain | (Klebsiella aerogenes ) [TaxId: 548 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Urease, beta-subunit | 8044423 | 3001949 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Urease, gamma-subunit | 8044422 | 3001945 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Metallo-dependent hydrolases | 8043413 | 3000428 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Composite domain of metallo-dependent hydrolases | 8043160 | 3000176 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Metallo-dependent hydrolases | 8043413 | 3000428 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Composite domain of metallo-dependent hydrolases | 8043160 | 3000176 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Urease_beta | e1fwgB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Urease, beta-subunit (From Topology) | T: Urease, beta-subunit | F: Urease_beta | ECOD (1.6) |
A | Urease_gamma | e1fwgA1 | A: a+b two layers | X: Urease, gamma-subunit (From Topology) | H: Urease, gamma-subunit (From Topology) | T: Urease, gamma-subunit | F: Urease_gamma | ECOD (1.6) |
C | Urease_alpha | e1fwgC1 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha | ECOD (1.6) |
C | Amidohydro_1_N | e1fwgC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.10.150.10 | Mainly Beta | Ribbon | Urease, subunit B | Urease, beta subunit | CATH (4.3.0) |
A | 3.30.280.10 | Alpha Beta | 2-Layer Sandwich | Urease | subunit A | CATH (4.3.0) |
C | 2.30.40.10 | Mainly Beta | Roll | Urease, subunit C | domain 1 | CATH (4.3.0) |
C | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00699 | Urease beta subunit (Urease_beta) | Urease beta subunit | This subunit is known as alpha in Heliobacter. | Domain | |
PF00547 | Urease, gamma subunit (Urease_gamma) | Urease, gamma subunit | Urease is a nickel-binding enzyme that catalyses the hydrolysis of urea to carbon dioxide and ammonia. | Domain | |
PF00449 | Urease alpha-subunit, N-terminal domain (Urease_alpha) | Urease alpha-subunit, N-terminal domain | The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit. | Domain | |
PF01979 | Amidohydrolase family (Amidohydro_1) | Amidohydrolase family | This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002019 | Urease, beta subunit-like | Family | |
IPR050069 | Urease subunit | Family | |
IPR036461 | Urease, beta subunit superfamily | Homologous Superfamily | |
IPR050069 | Urease subunit | Family | |
IPR012010 | Urease, gamma subunit | Family | |
IPR002026 | Urease, gamma/gamma-beta subunit | Family | |
IPR036463 | Urease, gamma subunit superfamily | Homologous Superfamily | |
IPR029754 | Urease nickel binding site | Binding Site | |
IPR017950 | Urease active site | Active Site | |
IPR006680 | Amidohydrolase-related | Domain | |
IPR011059 | Metal-dependent hydrolase, composite domain superfamily | Homologous Superfamily | |
IPR032466 | Metal-dependent hydrolase | Homologous Superfamily | |
IPR011612 | Urease alpha-subunit, N-terminal domain | Domain | |
IPR050112 | Urease Alpha Subunit | Family | |
IPR005848 | Urease, alpha subunit | Family | |
IPR017951 | Urease alpha subunit, C-terminal | Domain |