1F58
IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | PF07654 | e1f58L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A [auth L] | PF07686 | e1f58L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth H] | PF07654 | e1f58H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth H] | PF07686 | e1f58H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth L] | 58.2 mAb, anti-gp120 [HIV-1] | L-KAPPA | Mus musculus (house mouse) | IGKV3-4*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202421-0) |
B [auth H] | 58.2 mAb, anti-gp120 [HIV-1] | VH-CH1 | Mus musculus (house mouse) | IGHV3-1*02, IGHJ4*01, IGHG1*01 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202421-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L] | Light Chain | IGKV3 | Kappa | protein (exterior membrane glycoprotein(gp120)) | SAbDab (2024-05-31) |
B [auth H] | Heavy Chain | IGHV3 | - | protein (exterior membrane glycoprotein(gp120)) | SAbDab (2024-05-31) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth L] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
B [auth H] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
B [auth H] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
C [auth P] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth L] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth L] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth L] | IPR003599 | Immunoglobulin subtype | Domain |
A [auth L] | IPR013106 | Immunoglobulin V-set domain | Domain |
A [auth L] | IPR007110 | Immunoglobulin-like domain | Domain |
B [auth H] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth H] | IPR003599 | Immunoglobulin subtype | Domain |
B [auth H] | IPR003597 | Immunoglobulin C1-set | Domain |
B [auth H] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth H] | IPR013106 | Immunoglobulin V-set domain | Domain |
B [auth H] | IPR007110 | Immunoglobulin-like domain | Domain |
C [auth P] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
C [auth P] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
C [auth P] | IPR000328 | Retroviral envelope protein GP41-like | Domain |
C [auth P] | IPR037527 | Envelope glycoprotein Gp160 | Family |