THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1eu1a1 | All beta proteins | Double psi beta-barrel | ADC-like | Formate dehydrogenase/DMSO reductase, C-terminal domain | Dimethylsulfoxide reductase (DMSO reductase) | (Cereibacter sphaeroides ) [TaxId: 1063 ], | SCOPe (2.08) |
| A | d1eu1a2 | Alpha and beta proteins (a/b) | Formate dehydrogenase/DMSO reductase, domains 1-3 | Formate dehydrogenase/DMSO reductase, domains 1-3 | Formate dehydrogenase/DMSO reductase, domains 1-3 | Dimethylsulfoxide reductase (DMSO reductase) | (Cereibacter sphaeroides ) [TaxId: 1063 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8020621 | 4000801 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Formate dehydrogenase/DMSO reductase, C-terminal domain | 8030126 | 4002360 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8033001 | 3001453 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | ADC-like | 8042505 | 3001132 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Molydop_binding | e1eu1A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (v294.2) |
| A | Molybdopterin | e1eu1A4 | A: beta barrels | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin | ECOD (v294.2) |
| A | Molybdopterin | e1eu1A3 | A: beta barrels | X: Flavodoxin-like | H: Cysteine proteinases | T: Cysteine proteinases | F: Molybdopterin | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.40.50.740 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
| A | 3.40.228.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dimethylsulfoxide Reductase | domain 2 | CATH (4.3.0) |
| A | 3.90.55.10 | Alpha Beta | Alpha-Beta Complex | Dimethylsulfoxide Reductase | domain 3 | CATH (4.3.0) |
| A | 2.40.40.20 | Mainly Beta | Beta Barrel | Barwin-like endoglucanases | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| dimethylsulfoxide reductase M-CSA #701 | The molybdoenzyme dimethylsulfoxide (DMSO) reductase contributes to the release of dimethylsulfide, a compound that has been implicated in cloud nucleation and global climate regulation. Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. This enzyme contains a mononuclear Mo coordinated by two molybdopterin guanine dinucleotides as its single cofactor. | EC: 1.8.99 (PDB Primary Data) EC: 1.7.2.3 (UniProt) EC: 1.8.5.3 (UniProt) |














