1DVB
RUBRERYTHRIN
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1dvba1 | All alpha proteins | Ferritin-like | Ferritin-like | Ferritin | Rubrerythrin, N-terminal domain | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
A | d1dvba2 | Small proteins | Rubredoxin-like | Rubredoxin-like | Rubredoxin | Rubrerythrin, C-terminal domain | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Rubrerythrin | e1dvbA1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Ferritin | F: Rubrerythrin | ECOD (1.6) |
A | rubredoxin_SM | e1dvbA2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: rubredoxin_SM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1260.10 | Mainly Alpha | Up-down Bundle | Ferritin | Ferritin, core subunit, four-helix bundle | CATH (4.3.0) |
A | 2.20.28.10 | Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02915 | Rubrerythrin (Rubrerythrin) | Rubrerythrin | This domain has a ferritin-like fold. | Domain | |
PF21349 | Rubrerythrin, rubredoxin-like domain (RUBY_RBDX) | Rubrerythrin, rubredoxin-like domain | Rubrerythrin (RUBY) is a fusion protein containing an N-terminal diiron-binding domain (Pfam:PF02915) and a C-terminal rubredoxin-like domain. RUBY may play a role in oxidative stress. This entry represents the rubredoxin-like domain of RUBY and rev ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
RUBRERYTHRIN | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009040 | Ferritin-like diiron domain | Domain | |
IPR012347 | Ferritin-like | Homologous Superfamily | |
IPR009078 | Ferritin-like superfamily | Homologous Superfamily | |
IPR052364 | Rubrerythrin | Family | |
IPR024934 | Rubredoxin-like domain | Domain | |
IPR003251 | Rubrerythrin, diiron-binding domain | Domain | |
IPR048574 | Rubrerythrin, rubredoxin-like domain | Domain |