1DSV
STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (C-TERMINAL ZINC FINGER)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1dsva_ | Small proteins | Retrovirus zinc finger-like domains | Retrovirus zinc finger-like domains | Retrovirus zinc finger-like domains | Nucleic acid binding protein p14 | (Mouse mammary tumor virus ) [TaxId: 11757 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-CCHC_5 | e1dsvA1 | A: few secondary structure elements | X: CCHC-type 1 zinc finger | H: Retrovirus zinc finger-related domains (From Topology) | T: Retrovirus zinc finger-related domains | F: zf-CCHC_5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14787 | GAG-polyprotein viral zinc-finger (zf-CCHC_5) | GAG-polyprotein viral zinc-finger | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR050195 | Primate lentivirus group Gag polyprotein-like | Domain | |
IPR038124 | Beta-retroviral matrix superfamily | Homologous Superfamily | |
IPR003322 | Beta-retroviral matrix protein | Domain | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |