1DD3 | pdb_00001dd3

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L12 FROM THERMOTOGA MARITIMA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1dd3d_	All alpha proteins	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
C	d1dd3c_	All alpha proteins	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d1dd3b1	All alpha proteins	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
B	d1dd3b2	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Ribosomal protein L7/12, C-terminal domain	Ribosomal protein L7/12, C-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A	d1dd3a1	All alpha proteins	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)
A	d1dd3a2	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	Ribosomal protein L7/12, C-terminal domain	Ribosomal protein L7/12, C-terminal domain	(Thermotoga maritima ) [TaxId: 2336 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	8033488	3001092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	8033488	3001092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ClpS-like	8035078	3000936	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	8033488	3001092	SCOP2B (2022-06-29)
A	SCOP2 Family	Ribosomal protein L7/12, C-terminal domain	8022698	4001156	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ClpS-like	8035078	3000936	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	8033488	3001092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Flavi_capsid	e1dd3D1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Flavi_capsid	ECOD (v294.1)
C	Flavi_capsid	e1dd3C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Flavi_capsid	ECOD (v294.1)
B	HSP90	e1dd3B2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: HSP90	ECOD (v294.1)
B	PS-DH	e1dd3B3	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PS-DH	ECOD (v294.1)
A	HSP90	e1dd3A2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: HSP90	ECOD (v294.1)
A	PS-DH	e1dd3A3	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PS-DH	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.5.710	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
B	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
A	1.20.5.710	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Single helix bin	CATH (4.3.0)
A	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF16320	Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)	Ribosomal protein L7/L12 dimerisation domain	This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].	Domain
A, B	PF16320	Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)	Ribosomal protein L7/L12 dimerisation domain	This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].	Domain
A, B	PF00542	Ribosomal protein L7/L12 C-terminal domain (Ribosomal_L12)	Ribosomal protein L7/L12 C-terminal domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	50S RIBOSOMAL PROTEIN L7/L12	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
A, B	50S RIBOSOMAL PROTEIN L7/L12	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR008932	Large ribosomal subunit protein bL12, oligomerization	Domain
C, D	IPR013823	Large ribosomal subunit protein bL12, C-terminal	Domain
C, D	IPR036235	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Homologous Superfamily
C, D	IPR014719	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Homologous Superfamily
C, D	IPR000206	Large ribosomal subunit protein bL12	Family
A, B	IPR008932	Large ribosomal subunit protein bL12, oligomerization	Domain
A, B	IPR013823	Large ribosomal subunit protein bL12, C-terminal	Domain
A, B	IPR036235	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Homologous Superfamily
A, B	IPR014719	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Homologous Superfamily
A, B	IPR000206	Large ribosomal subunit protein bL12	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.