1CTM
CRYSTAL STRUCTURE OF CHLOROPLAST CYTOCHROME F REVEALS A NOVEL CYTOCHROME FOLD AND UNEXPECTED HEME LIGATION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ctma1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Cytochrome f, large domain | Cytochrome f, large domain | Cytochrome f, large domain | (Brassica rapa ) [TaxId: 3711 ], | SCOPe (2.08) |
A | d1ctma2 | All beta proteins | Barrel-sandwich hybrid | Rudiment single hybrid motif | Cytochrome f, small domain | Cytochrome f, small domain | (Brassica rapa ) [TaxId: 3711 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | cytochrome f, large domain | 8040245 | 3000800 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | cytochrome f, large domain | 8040245 | 3000800 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Rudiment single hybrid motif | 8043110 | 3001910 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Apocytochr_F_N | e1ctmA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Apocytochr_F_N | ECOD (1.6) |
A | Apocytochr_F_C_N | e1ctmA2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: Apocytochr_F_C_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.830 | Mainly Beta | Sandwich | Immunoglobulin-like | Cytochrome f large domain | CATH (4.3.0) |
A | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16639 | Apocytochrome F, N-terminal (Apocytochr_F_N) | Apocytochrome F, N-terminal | This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain [1]. | Domain | |
PF01333 | Apocytochrome F, C-terminal (Apocytochr_F_C) | Apocytochrome F, C-terminal | This is a sub-family of cytochrome C. See Pfam:PF00034. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002325 | Cytochrome f | Family | |
IPR011054 | Rudiment single hybrid motif | Homologous Superfamily | |
IPR036826 | Cytochrome f large domain superfamily | Homologous Superfamily | |
IPR024058 | Cytochrome f transmembrane anchor | Homologous Superfamily | |
IPR024094 | Cytochrome f large domain | Domain |