Annotations: 1BWV

Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H [auth Y]	d1bwvy_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
F [auth W]	d1bwvw_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
D [auth U]	d1bwvu_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
B [auth S]	d1bwvs_	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
G	d1bwvg1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
G	d1bwvg2	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
E	d1bwve1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
E	d1bwve2	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
C	d1bwvc1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
C	d1bwvc2	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
A	d1bwva1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	RuBisCo, C-terminal domain	RuBisCo, large subunit, C-terminal domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)
A	d1bwva2	Alpha and beta proteins (a+b)	Ferredoxin-like	RuBisCO, large subunit, small (N-terminal) domain	Ribulose 1,5-bisphosphate carboxylase-oxygenase	Ribulose 1,5-bisphosphate carboxylase-oxygenase	(Galdieria partita ) [TaxId: 83374 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth Y]	SCOP2B Superfamily	RuBisCO, small subunit	8035846	3001622	SCOP2B (2022-06-29)
F [auth W]	SCOP2B Superfamily	RuBisCO, small subunit	8035846	3001622	SCOP2B (2022-06-29)
D [auth U]	SCOP2B Superfamily	RuBisCO, small subunit	8035846	3001622	SCOP2B (2022-06-29)
B [auth S]	SCOP2 Family	RuBisCO, small subunit	8023466	4001455	SCOP2 (2022-06-29)
B [auth S]	SCOP2 Superfamily	RuBisCO, small subunit	8035846	3001622	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043696	3000552	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035445	3001258	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043696	3000552	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035445	3001258	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035445	3001258	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RuBisCo, C-terminal domain	8043696	3000552	SCOP2B (2022-06-29)
A	SCOP2 Family	Ribulose 1, 5-bisphosphate carboxylase-oxygenase	8023065	4001311	SCOP2 (2022-06-29)
A	SCOP2 Family	RuBisCo, large subunit, C-terminal domain	8031318	4003287	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RuBisCO, large subunit, small (N-terminal) domain	8035445	3001258	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RuBisCo, C-terminal domain	8043696	3000552	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth Y]	Propep_M14	e1bwvY1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Propep_M14	ECOD (v295.2)
F [auth W]	Propep_M14	e1bwvW1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Propep_M14	ECOD (v295.2)
D [auth U]	Propep_M14	e1bwvU1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Propep_M14	ECOD (v295.2)
B [auth S]	RuBisCO_small	e1bwvS1	A: a+b two layers	X: Reverse ferredoxin	H: RuBisCO, small subunit	T: RuBisCO, small subunit	F: RuBisCO_small	ECOD (v295.2)
G	Fer4,DUF3470	e1bwvG1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
G	NAD_binding_3	e1bwvG2	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)
E	Fer4,DUF3470	e1bwvE1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
E	NAD_binding_3	e1bwvE2	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)
C	Fer4,DUF3470	e1bwvC1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
C	NAD_binding_3	e1bwvC2	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)
A	Fer4,DUF3470	e1bwvA1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
A	NAD_binding_3	e1bwvA2	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth Y]	3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	CATH (4.3.0)
F [auth W]	3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	CATH (4.3.0)
D [auth U]	3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	CATH (4.3.0)
B [auth S]	3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	CATH (4.3.0)
G	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (4.3.0)
G	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (4.3.0)
E	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (4.3.0)
E	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (4.3.0)
C	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (4.3.0)
C	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (4.3.0)
A	3.30.70.150	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RuBisCO large subunit, N-terminal domain	CATH (4.3.0)
A	3.20.20.110	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth S], D [auth U], F [auth W], H [auth Y]	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process metabolic process cellular process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
A, C, E, G	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	carbohydrate metabolic process biosynthetic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process metabolic process cellular process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth S], D [auth U], F [auth W], H [auth Y]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
B [auth S], D [auth U], F [auth W], H [auth Y]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
B [auth S], D [auth U], F [auth W], H [auth Y]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
A, C, E, G	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
A, C, E, G	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
A, C, E, G	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
A, C, E, G	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
A, C, E, G	IPR033966	RuBisCO	Family
A, C, E, G	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily
A, C, E, G	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain