Structure of l-aminopeptidase d-ala-esterase/amidase from ochrobactrum anthropi, a prototype for the serine aminopeptidases, reveals a new variant among the ntn hydrolase fold
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | DmpA-like | 8024447 | 4002277 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | DmpA/ArgJ-like | 8053797 | 3001033 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | DmpA/ArgJ-like | 8036826 | 3001033 | SCOP2 (2022-06-29) |
| C | SCOP2B Superfamily | DmpA/ArgJ-like | 8053797 | 3001033 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | DmpA/ArgJ-like | 8036826 | 3001033 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | DmpA/ArgJ-like | 8053797 | 3001033 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | DmpA/ArgJ-like | 8036826 | 3001033 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | DmpA/ArgJ-like | 8036826 | 3001033 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | DmpA/ArgJ-like | 8053797 | 3001033 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | DmpA/ArgJ-like | 8053797 | 3001033 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | DmpA/ArgJ-like | 8036826 | 3001033 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | DmpA/ArgJ-like | 8053797 | 3001033 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | DmpA/ArgJ-like | 8036826 | 3001033 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Peptidase_S58 | e1b65A1 | A: a+b two layers | X: MocoBD/DmpA-related | H: MocoBD/DmpA-related | T: DmpA/ArgJ | F: Peptidase_S58 | ECOD (v294.1) |
| C | Staphylokinase | e1b65C1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Staphylokinase | ECOD (v294.1) |
| F | Staphylokinase | e1b65F1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Staphylokinase | ECOD (v294.1) |
| E | Staphylokinase | e1b65E1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Staphylokinase | ECOD (v294.1) |
| D | Staphylokinase | e1b65D1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Staphylokinase | ECOD (v294.1) |
| B | Staphylokinase | e1b65B1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: Staphylokinase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.60.70.12 | Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase | CATH (4.3.0) |
| C | 3.60.70.12 | Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase | CATH (4.3.0) |
| F | 3.60.70.12 | Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase | CATH (4.3.0) |
| E | 3.60.70.12 | Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase | CATH (4.3.0) |
| D | 3.60.70.12 | Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase | CATH (4.3.0) |
| B | 3.60.70.12 | Alpha Beta | 4-Layer Sandwich | L-amino peptidase D-ALA esterase/amidase | L-amino peptidase D-ALA esterase/amidase | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| PROTEIN (AMINOPEPTIDASE) | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| D-stereospecific aminopeptidase (peptidase S58 family) M-CSA #676 | The L-aminopeptidase D-Ala-esterase/amidase from Ochrobactrum anthropi (DmpA) is an aminopeptidase which catalyses the release of N-terminal residues from peptides substrates. It also shows D-amidasic and D-esterasic activities on D-alanine derivatives. DmpA and other β-aminopeptidases are able to to cleave synthetic β-peptides, which consist of backbone-elongated β-amino acid residues that are not processed by common proteolytic enzymes. β-peptides are considered promising building blocks for the design of novel peptidomimetics,small protein-like chains to mimic peptides which are useful for drug design, thus these enzymes that cleave and release them are useful for production of peptidominetics. | Defined by 5 residues: TYR:A-146ASN:A-218SER:A-250SER:A-288GLY:A-289 | EC: 3.4.11.19 (UniProt) |














