Annotations: 1AFO

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1afoa_	Peptides	Transmembrane helical fragments	Transmembrane helical fragments	Transmembrane helical fragments	Dimeric transmembrane domain of glycophorin A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1afob_	Peptides	Transmembrane helical fragments	Transmembrane helical fragments	Transmembrane helical fragments	Dimeric transmembrane domain of glycophorin A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PTN_MK_N	e1afoA1	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: PTN_MK_N	ECOD (v294.2)
B	PTN_MK_N	e1afoB1	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain	T: 40S ribosomal protein S3A N-terminal domain	F: PTN_MK_N	ECOD (v294.2)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.5.70	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.70	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Chains	Accession	Name	Description	Comments	Source
A, B	PF01102	Glycophorin A (Glycophorin_A)	Glycophorin A	-	Family

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	GLYCOPHORIN A	protein binding binding virus receptor activity exogenous protein binding identical protein binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane ankyrin-1 complex protein-containing complex membrane protein complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane ankyrin-1 complex protein-containing complex membrane protein complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

Chains	Accession	Name	Type
A, B	IPR018938	Glycophorin, conserved site	Conserved Site
A, B	IPR001195	Glycophorin	Family
A, B	IPR049535	Glycophorin A/B	Family

Chains	Drug Target	Associated Disease
A, B	: P02724	malaria skin neoplasm skin cancer chronic obstructive pulmonary disease osteosarcoma sarcoidosis MALT lymphoma

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Bitopic proteins	Glycophorin	Glycophorin

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Glycoproteins	Glycophorin A (GpA) transmembrane-domain dimer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

1AFO | pdb_00001afo