10SJ | pdb_000010sj

20S Alpha 3 Deletion proteasome core particle in complex with Blm10


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 2],
P [auth N]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
C [auth A],
Q [auth O]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
H [auth F],
V [auth T]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
H [auth F],
V [auth T]
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
K [auth I],
Y [auth W]
PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
AA [auth Y],
M [auth K]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
PF16507Proteasome activator complex subunit 4, mid HEAT repeats region (HEAT_PSME4_mid)Proteasome activator complex subunit 4, mid HEAT repeats region- Repeat
PF11919Proteasome activator complex subunit 4-like, C-terminal (PSME4_C)Proteasome activator complex subunit 4-like, C-terminalThis domain is found at the C-terminal end of human Proteasome activator complex subunit 4 (PSME4) and similar sequences from eukaryotes. PSME4 is an associated component of the proteasome that specifically recognises acetylated histones and promotes ...This domain is found at the C-terminal end of human Proteasome activator complex subunit 4 (PSME4) and similar sequences from eukaryotes. PSME4 is an associated component of the proteasome that specifically recognises acetylated histones and promotes ATP- and ubiquitin -independent degradation of core histones during spermatogenesis and DNA damage response. This protein adopts a dome-like structure composed of HEAT repeat-like modules and a C-terminal domain that contains a hydrophobic -tyrosine-other motif (this entry). This domain, which adopts an all-alpha structure, is responsible for the interaction with the alpha-ring surface of the 20S [1].
Domain
PF16547Proteasome-substrate-size regulator, N-terminal (BLM10_N)Proteasome-substrate-size regulator, N-terminalThe ordered regions of the yeast BLM10 or PA200 (human homologue), full-length protein encode 32 HEAT repeat (HR)-like modules [1], each comprising two helices joined by a turn, with adjacent repeats connected by a linker. Whereas a standard HEAT rep ...The ordered regions of the yeast BLM10 or PA200 (human homologue), full-length protein encode 32 HEAT repeat (HR)-like modules [1], each comprising two helices joined by a turn, with adjacent repeats connected by a linker. Whereas a standard HEAT repeat is composed of ~50 residues, the BLM10 HEAT repeats are highly variable. The length of helices ranges from 8 to 35 residues, turns range from 2 to 87 residues, and linkers range from 1 to 88 residues, with the longest linker, between HR21 and HR22, containing additional secondary structures (two strands and three helices). BLM10_N is the N-terminal ordered region of the three in BLM10. BLM10 is found to surround the proteasome entry pore in the 1.2 MDa complex of proteasome and BLM10 to form a largely closed dome that is expected to restrict access of potential substrates. BLM10 and PA200 are predominantly nuclear and stimulate the degradation of model peptides, although they do not appear to stimulate the degradation of proteins, recognise ubiquitin, or utilise ATP [2].
Domain
I [auth G],
W [auth U]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
I [auth G],
W [auth U]
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
G [auth E],
U [auth S]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
G [auth E],
U [auth S]
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
D [auth B],
R [auth P]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
D [auth B],
R [auth P]
PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
L [auth J],
Z [auth X]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
A [auth 1],
O [auth M]
PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 2],
P [auth N]
Proteasome subunit beta type-7-
C [auth A],
Q [auth O]
Proteasome subunit alpha type-1-
H [auth F],
V [auth T]
Proteasome subunit alpha type-6-
J [auth H],
X [auth V]
Proteasome subunit beta type-1
K [auth I],
Y [auth W]
Proteasome subunit beta type-2
AA [auth Y],
M [auth K]
Proteasome subunit beta type-4
BA [auth Z],
N [auth L]
Proteasome subunit beta type-5
Proteasome activator BLM10
I [auth G],
W [auth U]
Proteasome subunit alpha type-7
G [auth E],
U [auth S]
Proteasome subunit alpha type-5-
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
Proteasome subunit alpha type-4
D [auth B],
R [auth P]
Proteasome subunit alpha type-2-
L [auth J],
Z [auth X]
Proteasome subunit beta type-3
A [auth 1],
O [auth M]
Proteasome subunit beta type-6-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 2],
P [auth N]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
B [auth 2],
P [auth N]
IPR023333Proteasome B-type subunitFamily
B [auth 2],
P [auth N]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
B [auth 2],
P [auth N]
IPR016295Proteasome subunit beta 4Family
B [auth 2],
P [auth N]
IPR001353Proteasome, subunit alpha/betaFamily
C [auth A],
Q [auth O]
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
C [auth A],
Q [auth O]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
C [auth A],
Q [auth O]
IPR050115Proteasome_alphaUnknown
C [auth A],
Q [auth O]
IPR023332Proteasome alpha-type subunitFamily
C [auth A],
Q [auth O]
IPR001353Proteasome, subunit alpha/betaFamily
C [auth A],
Q [auth O]
IPR034642Proteasome subunit alpha6Family
H [auth F],
V [auth T]
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
H [auth F],
V [auth T]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
H [auth F],
V [auth T]
IPR050115Proteasome_alphaUnknown
H [auth F],
V [auth T]
IPR023332Proteasome alpha-type subunitFamily
H [auth F],
V [auth T]
IPR001353Proteasome, subunit alpha/betaFamily
J [auth H],
X [auth V]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
J [auth H],
X [auth V]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
J [auth H],
X [auth V]
IPR023333Proteasome B-type subunitFamily
J [auth H],
X [auth V]
IPR001353Proteasome, subunit alpha/betaFamily
J [auth H],
X [auth V]
IPR000243Peptidase T1A, proteasome beta-subunitFamily
K [auth I],
Y [auth W]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
K [auth I],
Y [auth W]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
K [auth I],
Y [auth W]
IPR024689Proteasome beta subunit, C-terminalDomain
K [auth I],
Y [auth W]
IPR023333Proteasome B-type subunitFamily
K [auth I],
Y [auth W]
IPR001353Proteasome, subunit alpha/betaFamily
K [auth I],
Y [auth W]
IPR000243Peptidase T1A, proteasome beta-subunitFamily
AA [auth Y],
M [auth K]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
AA [auth Y],
M [auth K]
IPR023333Proteasome B-type subunitFamily
AA [auth Y],
M [auth K]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
AA [auth Y],
M [auth K]
IPR001353Proteasome, subunit alpha/betaFamily
AA [auth Y],
M [auth K]
IPR035206Proteasome subunit beta 2Family
BA [auth Z],
N [auth L]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
BA [auth Z],
N [auth L]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
BA [auth Z],
N [auth L]
IPR023333Proteasome B-type subunitFamily
BA [auth Z],
N [auth L]
IPR001353Proteasome, subunit alpha/betaFamily
BA [auth Z],
N [auth L]
IPR000243Peptidase T1A, proteasome beta-subunitFamily
IPR016024Armadillo-type foldHomologous Superfamily
IPR032430Proteasome activator Blm10, middle HEAT repeats regionDomain
IPR032372Proteasome activator Blm10, N-terminalDomain
IPR055455Proteasome activator complex subunit 4-like, HEAT repeat-likeDomain
IPR035309Proteasome activator complex subunit 4Family
IPR021843Proteasome activator complex subunit 4, C-terminal domainDomain
I [auth G],
W [auth U]
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
I [auth G],
W [auth U]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
I [auth G],
W [auth U]
IPR050115Proteasome_alphaUnknown
I [auth G],
W [auth U]
IPR023332Proteasome alpha-type subunitFamily
I [auth G],
W [auth U]
IPR001353Proteasome, subunit alpha/betaFamily
G [auth E],
U [auth S]
IPR033812Proteasome subunit alpha5Family
G [auth E],
U [auth S]
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
G [auth E],
U [auth S]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G [auth E],
U [auth S]
IPR050115Proteasome_alphaUnknown
G [auth E],
U [auth S]
IPR023332Proteasome alpha-type subunitFamily
G [auth E],
U [auth S]
IPR001353Proteasome, subunit alpha/betaFamily
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
IPR050115Proteasome_alphaUnknown
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
IPR023332Proteasome alpha-type subunitFamily
E [auth C],
F [auth D],
S [auth Q],
T [auth R]
IPR001353Proteasome, subunit alpha/betaFamily
D [auth B],
R [auth P]
IPR000426Proteasome alpha-subunit, N-terminal domainDomain
D [auth B],
R [auth P]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
D [auth B],
R [auth P]
IPR050115Proteasome_alphaUnknown
D [auth B],
R [auth P]
IPR023332Proteasome alpha-type subunitFamily
D [auth B],
R [auth P]
IPR001353Proteasome, subunit alpha/betaFamily
L [auth J],
Z [auth X]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
L [auth J],
Z [auth X]
IPR023333Proteasome B-type subunitFamily
L [auth J],
Z [auth X]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
L [auth J],
Z [auth X]
IPR001353Proteasome, subunit alpha/betaFamily
L [auth J],
Z [auth X]
IPR033811Proteasome beta 3 subunitFamily
A [auth 1],
O [auth M]
IPR016050Proteasome beta-type subunit, conserved siteConserved Site
A [auth 1],
O [auth M]
IPR023333Proteasome B-type subunitFamily
A [auth 1],
O [auth M]
IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
A [auth 1],
O [auth M]
IPR001353Proteasome, subunit alpha/betaFamily