10RJ | pdb_000010rj

Heparin-induced cis tetrameric complex of VEGF, VEGFR2 and Neuropilin 1

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth F],
B [auth L],
F [auth E],
K		PF00754F5/8 type C domain (F5_F8_type_C)F5/8 type C domainThis domain is also known as the discoidin (DS) domain family [1]. Domain
A [auth F],
B [auth L],
F [auth E],
K		PF00431CUB domain (CUB)CUB domainDomain
C [auth A],
D [auth B],
H [auth G],
I [auth H]		PF00341PDGF/VEGF domain (PDGF)PDGF/VEGF domainDomain
C [auth A],
D [auth B],
H [auth G],
I [auth H]		PF14554VEGF heparin-binding domain (VEGF_C)VEGF heparin-binding domainThis short domain is found at the C-terminus of VEGF. It has been shown to have heparin binding activity. Domain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		PF22971VEGFR-1-like, immunoglobulin-like domain (Ig_VEGFR-1-like_5th)VEGFR-1-like, immunoglobulin-like domainThis is the fifth immunoglobulin-like domain of human Vascular endothelial growth factor receptor 1 (VEGFR-1) and similar sequences mainly found in animals. VEGFR-1 is a tyrosine-protein kinase that plays an essential role in the development of embry ...This is the fifth immunoglobulin-like domain of human Vascular endothelial growth factor receptor 1 (VEGFR-1) and similar sequences mainly found in animals. VEGFR-1 is a tyrosine-protein kinase that plays an essential role in the development of embryonic vasculature, the regulation of angiogenesis, cell survival, cell migration, macrophage function, chemotaxis, and cancer cell invasion.
Domain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		PF13927Immunoglobulin domain (Ig_3)Immunoglobulin domainThis family contains immunoglobulin-like domains. Domain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		PF07679Immunoglobulin I-set domain (I-set)Immunoglobulin I-set domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		PF21339Vascular endothelial growth factor receptor 1-like, Ig-like domain (VEGFR-1-like_Ig-like)Vascular endothelial growth factor receptor 1-like, Ig-like domainThis domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the developmen ...This domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the development of embryonic vasculature, the regulation of angiogenesis and other essential cellular processes. It consists of seven immunoglobulin-like (Ig-like) domains in its extracellular portion. This entry represents the second of these domains [1-5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth F],
B [auth L],
F [auth E],
K		Neuropilin-1
C [auth A],
D [auth B],
H [auth G],
I [auth H]		Isoform VEGF-1 of Vascular endothelial growth factor A, long form
E [auth C],
G [auth D],
J [auth I],
L [auth J]		Vascular endothelial growth factor receptor 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth F],
B [auth L],
F [auth E],
K		IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
A [auth F],
B [auth L],
F [auth E],
K		IPR000859CUB domainDomain
A [auth F],
B [auth L],
F [auth E],
K		IPR022579Neuropilin, C-terminalDomain
A [auth F],
B [auth L],
F [auth E],
K		IPR000421Coagulation factor 5/8, C-terminal domainDomain
A [auth F],
B [auth L],
F [auth E],
K		IPR035914Spermadhesin, CUB domain superfamilyHomologous Superfamily
A [auth F],
B [auth L],
F [auth E],
K		IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A [auth F],
B [auth L],
F [auth E],
K		IPR014648NeuropilinFamily
A [auth F],
B [auth L],
F [auth E],
K		IPR050633Neuropilin/Multicopper Oxidase/Coagulation FactorFamily
A [auth F],
B [auth L],
F [auth E],
K		IPR000998MAM domainDomain
C [auth A],
D [auth B],
H [auth G],
I [auth H]		IPR029034Cystine-knot cytokineHomologous Superfamily
C [auth A],
D [auth B],
H [auth G],
I [auth H]		IPR036841Vascular endothelial growth factor, heparin-binding domain superfamilyHomologous Superfamily
C [auth A],
D [auth B],
H [auth G],
I [auth H]		IPR023581Platelet-derived growth factor, conserved siteConserved Site
C [auth A],
D [auth B],
H [auth G],
I [auth H]		IPR000072PDGF/VEGF domainDomain
C [auth A],
D [auth B],
H [auth G],
I [auth H]		IPR027928Vascular endothelial growth factor, heparin-binding domainDomain
C [auth A],
D [auth B],
H [auth G],
I [auth H]		IPR050507Platelet-derived/Vascular endothelial growth factorFamily
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR001824Tyrosine-protein kinase, receptor class III, conserved siteConserved Site
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR020635Tyrosine-protein kinase, catalytic domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR000719Protein kinase domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR003599Immunoglobulin domain subtypeDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR013783Immunoglobulin-like foldHomologous Superfamily
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR007110Immunoglobulin-like domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR055238VEGFR1-3-like, N-terminal Ig-like domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR017441Protein kinase, ATP binding siteBinding Site
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR041348VEGFR-2, transmembrane domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR008266Tyrosine-protein kinase, active siteActive Site
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR009136Vascular endothelial growth factor receptor 2 (VEGFR2)Family
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR055229VEGFR1-3, fifth immunoglobulin-like domainDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR003598Immunoglobulin subtype 2Domain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR013098Immunoglobulin I-setDomain
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
E [auth C],
G [auth D],
J [auth I],
L [auth J]		IPR050122Receptor Tyrosine KinaseFamily