- FASTA Sequence
- mmCIF Format
- mmCIF Format (Header)
- PDB format files are not available for large structures. Please use PDBx/mmCIF or PDBML/XML files.
- PDB Format
- PDB Format (Header)
Structure of PSII-FCP supercomplex from a centric diatom Chaetoceros gracilis at 3.02 angstrom resolution
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FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/6jlu.cif)
FileManager opening url https://files.rcsb.org/download/6jlu.cif
The Resolver thinks MMCif
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filtering with ;BIOMOLECULE 1;
TITLE: The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Setting space group name to HM:P 1
A86 = (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate
BCR = BETA-CAROTENE
BCT = BICARBONATE ION
CL = CHLORIDE ION
CLA = CHLOROPHYLL A
DD6 = (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
DGD = DIGALACTOSYL DIACYL GLYCEROL (DGDG)
FE2 = FE (II) ION
HEM = PROTOPORPHYRIN IX CONTAINING FE
HOH = WATER
KC1 = Chlorophyll c1
KC2 = Chlorophyll c2
LHG = 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
LMG = 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
OEX = CA-MN4-O5 CLUSTER
PHO = PHEOPHYTIN A
PL9 = 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
SQD = 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
6JLU
biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF,LF,MF,NF,OF,PF,QF,RF,SF,TF,UF,VF,WF,XF,YF,ZF,AG,BG,CG,DG,EG,FG,GG,HG,IG,JG,KG,LG,MG,NG,OG,PG,QG,RG,SG,TG,UG,VG,WG,XG,YG,ZG,AH,BH,CH,DH,EH,FH,GH,HH,IH,JH,KH,LH,MH,NH,OH,PH,QH,RH,SH,TH,UH,VH,WH,XH,YH,ZH,AI,BI,CI,DI,EI,FI,GI,HI,II,JI,KI,LI,MI,NI,OI,PI,QI,RI,SI,TI,UI,VI,WI,XI,YI,ZI,AJ,BJ,CJ,DJ,EJ,FJ,GJ,HJ,IJ,JJ,KJ,LJ,MJ,NJ,OJ,PJ,QJ,RJ,SJ,TJ,UJ,VJ,WJ,XJ,YJ,ZJ,AK,BK,CK,DK,EK,FK,GK,HK,IK,JK,KK,LK,MK,NK,OK,PK,QK,RK,SK,TK,UK,VK,WK,XK,YK,ZK,AL,BL,CL,DL,EL,FL,GL,HL,IL,JL,KL,LL,ML,NL,OL,PL,QL,RL,SL,TL,UL,VL,WL,XL,YL,ZL,AM,BM,CM,DM,EM,FM,GM,HM,IM,JM,KM,LM,MM,NM,OM,PM,QM,RM,SM,TM,UM,VM,WM,XM,YM,ZM,AN,BN,CN,DN,EN,FN,GN,HN,IN,JN,KN,LN,MN,NN,ON,PN,QN,RN,SN,TN,UN,VN,WN,XN,YN,ZN,AO,BO,CO,DO,EO,FO,GO,HO,IO,JO,KO,LO,MO,NO,OO,PO,QO,RO,SO,TO,UO,VO,WO,XO,YO,ZO,AP,BP,CP,DP,EP,FP,GP,HP,IP,JP,KP,LP,MP,NP,OP,PP,QP,RP,SP,TP,UP,VP,WP,XP,YP,ZP,AQ,BQ,CQ,DQ,EQ,FQ,GQ,HQ,IQ,JQ,KQ,LQ,MQ,NQ,OQ,PQ,QQ,RQ,SQ,TQ,UQ,VQ,WQ,XQ,YQ,ZQ,AR,BR,CR,DR,ER,FR,GR,HR,IR,JR,KR,LR,MR,NR,OR,PR,QR,RR,SR,TR,UR,VR,WR,XR,YR,ZR,AS,BS,CS,DS,ES,FS,GS,HS,IS,JS,KS,LS,MS,NS,OS,PS,QS,RS,SS,TS,US,VS,WS,XS,YS,ZS,AT,BT,CT,DT,ET,FT,GT,HT,IT,JT,KT,LT,MT,NT,OT,PT,QT,RT,ST,TT,UT,VT,WT,XT,YT,ZT,AU,BU,CU,DU,EU,FU,GU,HU,IU,JU,KU,LU,MU,NU,OU,PU,QU,RU,SU,TU,UU,VU,WU,XU,YU,ZU,AV,BV,CV,DV,EV,FV,GV,HV,IV,JV,KV,LV,MV,NV,OV,PV,QV,RV,SV,TV,UV,VV,WV,XV,YV,ZV,AW,BW,CW,DW,EW,FW,GW,HW,IW
found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF,LF,MF,NF,OF,PF,QF,RF,SF,TF,UF,VF,WF,XF,YF,ZF,AG,BG,CG,DG,EG,FG,GG,HG,IG,JG,KG,LG,MG,NG,OG,PG,QG,RG,SG,TG,UG,VG,WG,XG,YG,ZG,AH,BH,CH,DH,EH,FH,GH,HH,IH,JH,KH,LH,MH,NH,OH,PH,QH,RH,SH,TH,UH,VH,WH,XH,YH,ZH,AI,BI,CI,DI,EI,FI,GI,HI,II,JI,KI,LI,MI,NI,OI,PI,QI,RI,SI,TI,UI,VI,WI,XI,YI,ZI,AJ,BJ,CJ,DJ,EJ,FJ,GJ,HJ,IJ,JJ,KJ,LJ,MJ,NJ,OJ,PJ,QJ,RJ,SJ,TJ,UJ,VJ,WJ,XJ,YJ,ZJ,AK,BK,CK,DK,EK,FK,GK,HK,IK,JK,KK,LK,MK,NK,OK,PK,QK,RK,SK,TK,UK,VK,WK,XK,YK,ZK,AL,BL,CL,DL,EL,FL,GL,HL,IL,JL,KL,LL,ML,NL,OL,PL,QL,RL,SL,TL,UL,VL,WL,XL,YL,ZL,AM,BM,CM,DM,EM,FM,GM,HM,IM,JM,KM,LM,MM,NM,OM,PM,QM,RM,SM,TM,UM,VM,WM,XM,YM,ZM,AN,BN,CN,DN,EN,FN,GN,HN,IN,JN,KN,LN,MN,NN,ON,PN,QN,RN,SN,TN,UN,VN,WN,XN,YN,ZN,AO,BO,CO,DO,EO,FO,GO,HO,IO,JO,KO,LO,MO,NO,OO,PO,QO,RO,SO,TO,UO,VO,WO,XO,YO,ZO,AP,BP,CP,DP,EP,FP,GP,HP,IP,JP,KP,LP,MP,NP,OP,PP,QP,RP,SP,TP,UP,VP,WP,XP,YP,ZP,AQ,BQ,CQ,DQ,EQ,FQ,GQ,HQ,IQ,JQ,KQ,LQ,MQ,NQ,OQ,PQ,QQ,RQ,SQ,TQ,UQ,VQ,WQ,XQ,YQ,ZQ,AR,BR,CR,DR,ER,FR,GR,HR,IR,JR,KR,LR,MR,NR,OR,PR,QR,RR,SR,TR,UR,VR,WR,XR,YR,ZR,AS,BS,CS,DS,ES,FS,GS,HS,IS,JS,KS,LS,MS,NS,OS,PS,QS,RS,SS,TS,US,VS,WS,XS,YS,ZS,AT,BT,CT,DT,ET,FT,GT,HT,IT,JT,KT,LT,MT,NT,OT,PT,QT,RT,ST,TT,UT,VT,WT,XT,YT,ZT,AU,BU,CU,DU,EU,FU,GU,HU,IU,JU,KU,LU,MU,NU,OU,PU,QU,RU,SU,TU,UU,VU,WU,XU,YU,ZU,AV,BV,CV,DV,EV,FV,GV,HV,IV,JV,KV,LV,MV,NV,OV,PV,QV,RV,SV,TV,UV,VV,WV,XV,YV,ZV,AW,BW,CW,DW,EW,FW,GW,HW,IW
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Time for openFile(https://files.rcsb.org/download/6jlu.cif): 5799 ms
reading 102777 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
102777 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 2730 ms
TITLE: The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
A86 = (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate
BCR = BETA-CAROTENE
BCT = BICARBONATE ION
CL = CHLORIDE ION
CLA = CHLOROPHYLL A
DD6 = (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
DGD = DIGALACTOSYL DIACYL GLYCEROL (DGDG)
FE2 = FE (II) ION
HEM = PROTOPORPHYRIN IX CONTAINING FE
HOH = WATER
KC1 = Chlorophyll c1
KC2 = Chlorophyll c2
LHG = 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
LMG = 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
OEX = CA-MN4-O5 CLUSTER
PHO = PHEOPHYTIN A
PL9 = 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
SQD = 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
6JLU
found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD,SD,TD,UD,VD,WD,XD,YD,ZD,AE,BE,CE,DE,EE,FE,GE,HE,IE,JE,KE,LE,ME,NE,OE,PE,QE,RE,SE,TE,UE,VE,WE,XE,YE,ZE,AF,BF,CF,DF,EF,FF,GF,HF,IF,JF,KF,LF,MF,NF,OF,PF,QF,RF,SF,TF,UF,VF,WF,XF,YF,ZF,AG,BG,CG,DG,EG,FG,GG,HG,IG,JG,KG,LG,MG,NG,OG,PG,QG,RG,SG,TG,UG,VG,WG,XG,YG,ZG,AH,BH,CH,DH,EH,FH,GH,HH,IH,JH,KH,LH,MH,NH,OH,PH,QH,RH,SH,TH,UH,VH,WH,XH,YH,ZH,AI,BI,CI,DI,EI,FI,GI,HI,II,JI,KI,LI,MI,NI,OI,PI,QI,RI,SI,TI,UI,VI,WI,XI,YI,ZI,AJ,BJ,CJ,DJ,EJ,FJ,GJ,HJ,IJ,JJ,KJ,LJ,MJ,NJ,OJ,PJ,QJ,RJ,SJ,TJ,UJ,VJ,WJ,XJ,YJ,ZJ,AK,BK,CK,DK,EK,FK,GK,HK,IK,JK,KK,LK,MK,NK,OK,PK,QK,RK,SK,TK,UK,VK,WK,XK,YK,ZK,AL,BL,CL,DL,EL,FL,GL,HL,IL,JL,KL,LL,ML,NL,OL,PL,QL,RL,SL,TL,UL,VL,WL,XL,YL,ZL,AM,BM,CM,DM,EM,FM,GM,HM,IM,JM,KM,LM,MM,NM,OM,PM,QM,RM,SM,TM,UM,VM,WM,XM,YM,ZM,AN,BN,CN,DN,EN,FN,GN,HN,IN,JN,KN,LN,MN,NN,ON,PN,QN,RN,SN,TN,UN,VN,WN,XN,YN,ZN,AO,BO,CO,DO,EO,FO,GO,HO,IO,JO,KO,LO,MO,NO,OO,PO,QO,RO,SO,TO,UO,VO,WO,XO,YO,ZO,AP,BP,CP,DP,EP,FP,GP,HP,IP,JP,KP,LP,MP,NP,OP,PP,QP,RP,SP,TP,UP,VP,WP,XP,YP,ZP,AQ,BQ,CQ,DQ,EQ,FQ,GQ,HQ,IQ,JQ,KQ,LQ,MQ,NQ,OQ,PQ,QQ,RQ,SQ,TQ,UQ,VQ,WQ,XQ,YQ,ZQ,AR,BR,CR,DR,ER,FR,GR,HR,IR,JR,KR,LR,MR,NR,OR,PR,QR,RR,SR,TR,UR,VR,WR,XR,YR,ZR,AS,BS,CS,DS,ES,FS,GS,HS,IS,JS,KS,LS,MS,NS,OS,PS,QS,RS,SS,TS,US,VS,WS,XS,YS,ZS,AT,BT,CT,DT,ET,FT,GT,HT,IT,JT,KT,LT,MT,NT,OT,PT,QT,RT,ST,TT,UT,VT,WT,XT,YT,ZT,AU,BU,CU,DU,EU,FU,GU,HU,IU,JU,KU,LU,MU,NU,OU,PU,QU,RU,SU,TU,UU,VU,WU,XU,YU,ZU,AV,BV,CV,DV,EV,FV,GV,HV,IV,JV,KV,LV,MV,NV,OV,PV,QV,RV,SV,TV,UV,VV,WV,XV,YV,ZV,AW,BW,CW,DW,EW,FW,GW,HW,IW
Adding embedded #jmolscript: select ({0:76631}) & connected; wireframe only;select ({76632:102776}) & !connected;stars 0.5;spacefill off;select *;
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Script completed
Jmol script terminated
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script 2 started
0 atoms hidden
102777 atoms selected
26144 atoms selected
6 atoms selected
0 atoms selected
0 atoms selected
102777 atoms selected
Script completed
Jmol script terminated
script 3 started
0 atoms hidden
102777 atoms selected
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26144 atoms selected
102777 atoms selected
Script completed
Jmol script terminated
script 4 started
Script completed
Jmol script terminated
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