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 6JLU | pdb_00006jlu

Structure of PSII-FCP supercomplex from a centric diatom Chaetoceros gracilis at 3.02 angstrom resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094731 3001547 SCOP2B (2022-06-29)
GA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094731 3001547 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyCytochrome c 8094925 3000815 SCOP2B (2022-06-29)
TA [auth v]SCOP2 FamilyMonodomain cytochrome c 8094924 4000635 SCOP2 (2022-06-29)
TA [auth v]SCOP2 SuperfamilyCytochrome c 8094925 3000815 SCOP2 (2022-06-29)
T [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8094223 3000893 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like 8094223 3000893 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyOMPA barrel-like 8095677 3000208 SCOP2B (2022-06-29)
NA [auth o]SCOP2 FamilyPsbO-like 8095676 4002770 SCOP2 (2022-06-29)
NA [auth o]SCOP2 SuperfamilyOMPA barrel-like 8095677 3000208 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IPsbLe6jluI1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
HA [auth i]PsbLe6jlui1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
HPsbLe6jluH1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
GA [auth h]PsbLe6jluh1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
GPsbLe6jluG1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
FA [auth g]PsbLe6jlug1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
FPsbLe6jluF1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
EA [auth f]PsbLe6jluf1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
EPsbLe6jluE1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
DA [auth e]PsbLe6jlue1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
DPsbLe6jluD1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
CA [auth d]PsbLe6jlud1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
CPsbLe6jluC1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
BA [auth c]PsbLe6jluc1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
RB [auth 19]Lyse6jlu191 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
HB [auth 9]Lyse6jlu91 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
ZA [auth 1]Lyse6jlu11 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
QB [auth 18]Lyse6jlu181 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
PB [auth 17]Lyse6jlu171 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
OB [auth 16]Lyse6jlu161 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
NB [auth 15]Lyse6jlu151 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
MB [auth 14]Lyse6jlu141 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
LB [auth 13]Lyse6jlu131 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
KB [auth 12]Lyse6jlu121 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
JB [auth 11]Lyse6jlu111 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
GB [auth 8]Lyse6jlu81 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
FB [auth 7]Lyse6jlu71 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
EB [auth 6]Lyse6jlu61 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
DB [auth 5]Lyse6jlu51 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
CB [auth 4]Lyse6jlu41 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
BB [auth 3]Lyse6jlu31 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
AB [auth 2]Lyse6jlu21 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
YA [auth 0]Lyse6jlu01 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
IB [auth 10]Lyse6jlu101 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
Y [auth Z]Lyse6jluZ1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
XA [auth z]Lyse6jluz1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
X [auth Y]Lyse6jluY1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
WA [auth y]Lyse6jluy1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
W [auth X]Lyse6jluX1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
VA [auth x]Lyse6jlux1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
V [auth W]SATe6jluW01 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: SATECOD (v295.2)
U [auth V]Lyse6jluV1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
TA [auth v]Lyse6jluv1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
T [auth U]Lyse6jluU1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
SA [auth u]Lyse6jluu1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
BPsbLe6jluB1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
AA [auth b]PsbLe6jlub1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
S [auth T]Lyse6jluT1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
RA [auth t]Lyse6jlut1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
QPico_P1Ae6jluQ1 A: alpha arraysX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: Pico_P1AECOD (v295.2)
PA [auth q]Pico_P1Ae6jluq1 A: alpha arraysX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: Pico_P1AECOD (v295.2)
PLyse6jluP1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
OA [auth p]Lyse6jlup1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
OLyse6jluO1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
NA [auth o]Lyse6jluo1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
MLyse6jluM1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
LA [auth m]Lyse6jlum1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: LysECOD (v295.2)
LPsbLe6jluL1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
KA [auth l]PsbLe6jlul1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
KPsbLe6jluK1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
JA [auth k]PsbLe6jluk1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
JPsbLe6jluJ1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
IA [auth j]PsbLe6jluj1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
Z [auth a]PsbLe6jlua1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)
APsbLe6jluA1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: PsbLECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HA [auth i],
I
PsbI---
GA [auth h],
H
Photosystem II reaction center protein H
FA [auth g],
G
Psb31---
EA [auth f],
F
PsbF---
DA [auth e],
E
PsbE---
CA [auth d],
D
PsbD---
BA [auth c],
C
PsbC---
HB [auth 9],
RB [auth 19]
FCP-F---
FCP-A---
IB [auth 10],
YA [auth 0]
FCP-E---
XA [auth z],
Y [auth Z]
PsbZ---
WA [auth y],
X [auth Y]
PsbY---
VA [auth x],
W [auth X]
Photosystem II reaction center X protein-
UA [auth w],
V [auth W]
PsbW---
TA [auth v],
U [auth V]
Cytochrome c-550
SA [auth u],
T [auth U]
Extrinsic protein in photosystem II-
AA [auth b],
B
PsbB---
RA [auth t],
S [auth T]
PsbT---
QA [auth r],
R
PsbG---
PA [auth q],
Q
Extrinsic protein in photosystem II- - -
OA [auth p],
P
FCP-D---
NA [auth o],
O
Extrinsic protein in photosystem II-
MA [auth n],
N
Psb34---
LA [auth m],
M
PsbM---
KA [auth l],
L
PsbL---
JA [auth k],
K
PsbK---
IA [auth j],
J
PsbJ---
A,
Z [auth a]
PsbA---