5WDA

Structure of the PulG pseudopilus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the calcium-dependent type 2 secretion pseudopilus.

Lopez-Castilla, A.Thomassin, J.L.Bardiaux, B.Zheng, W.Nivaskumar, M.Yu, X.Nilges, M.Egelman, E.H.Izadi-Pruneyre, N.Francetic, O.

(2017) Nat Microbiol 2: 1686-1695

  • DOI: https://doi.org/10.1038/s41564-017-0041-2
  • Primary Citation of Related Structures:  
    5O2Y, 5WDA

  • PubMed Abstract: 

    Many Gram-negative bacteria use type 2 secretion systems (T2SSs) to secrete proteins involved in virulence and adaptation. Transport of folded proteins via T2SS nanomachines requires the assembly of inner membrane-anchored fibres called pseudopili. Although efficient pseudopilus assembly is essential for protein secretion, structure-based functional analyses are required to unravel the mechanistic link between these processes. Here, we report an atomic model for a T2SS pseudopilus from Klebsiella oxytoca, obtained by fitting the NMR structure of its calcium-bound subunit PulG into the ~5-Å-resolution cryo-electron microscopy reconstruction of assembled fibres. This structure reveals the comprehensive network of inter-subunit contacts and unexpected features, including a disordered central region of the PulG helical stem, and highly flexible C-terminal residues on the fibre surface. NMR, mutagenesis and functional analyses highlight the key role of calcium in PulG folding and stability. Fibre disassembly in the absence of calcium provides a basis for pseudopilus length control, essential for protein secretion, and supports the Archimedes screw model for the type 2 secretion mechanism.


  • Organizational Affiliation

    NMR of Biomolecules Unit, Department of Structural Biology and Chemistry, Institut Pasteur, CNRS UMR3528, 28 rue du Dr Roux, 75724, Paris, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
General secretion pathway protein G
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y
134Klebsiella oxytocaMutation(s): 0 
Gene Names: pulGAB185_31145SAMEA2273639_02747
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download Ideal Coordinates CCD File 
AA [auth B]
BA [auth C]
CA [auth D]
DA [auth E]
EA [auth F]
AA [auth B],
BA [auth C],
CA [auth D],
DA [auth E],
EA [auth F],
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J],
JA [auth K],
KA [auth L],
LA [auth M],
MA [auth N],
NA [auth O],
OA [auth P],
PA [auth Q],
QA [auth R],
RA [auth S],
SA [auth T],
TA [auth U],
UA [auth V],
VA [auth W],
WA [auth X],
XA [auth Y],
Z [auth A]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MEA
Query on MEA
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y
L-PEPTIDE LINKINGC10 H13 N O2PHE
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.00 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONIHRSR

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM122510
Agence Nationale de la RechercheFranceANR-14-CE09-0004
European Union (EU)European UnionFP7-IDEAS-ERC 294809

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-25
    Type: Initial release
  • Version 1.1: 2017-12-13
    Changes: Database references
  • Version 1.2: 2020-01-01
    Changes: Author supporting evidence