Download MendeleyX-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate
SSGCID, Fairman, J.W., Dranow, D.M., Taylor, B.M., Lorimer, D., Edwards, T.E.To be published.
4WHX
X-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate
- PDB DOI: https://doi.org/10.2210/pdb4WHX/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia pseudomallei 576
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-09-23 Released: 2014-10-08
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.198
- R-Value Work: 0.162
- R-Value Observed: 0.164
wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Branched-chain-amino-acid transaminase | 311 | Burkholderia pseudomallei 576 | Mutation(s): 0 Gene Names: ilvE, BUC_1039 EC: 2.6.1.42 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ALA Query on ALA | G [auth A], I [auth C], J [auth D], K [auth E] | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |  | ||
| EDO Query on EDO | H [auth A], L [auth E] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| LLP Query on LLP | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.198
- R-Value Work: 0.162
- R-Value Observed: 0.164
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M34WHX
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.14 | α = 90 |
| b = 230.35 | β = 90 |
| c = 77.53 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| XDS | data reduction |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2014-10-08 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID), Fairman, J.W., Dranow, D.M., Taylor, B.M., Lorimer, D., Edwards, T.E.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2014-10-08
Type: Initial release - Version 1.1: 2014-11-05
Changes: Structure summary - Version 2.0: 2017-09-20
Changes: Author supporting evidence, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary - Version 2.1: 2019-12-11
Changes: Author supporting evidence - Version 2.2: 2023-12-27
Changes: Data collection, Database references, Refinement description
