2GUJ

Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.

• PDB DOI: https://doi.org/10.2210/pdb2GUJ/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-04-30 Released: 2006-05-23 
• Deposition Author(s): Kuzin, A.P., Zhou, W., Seetharaman, J., Cunningham, K., Janjua, H., Konover, K., Ma, L.C., Xiao, R., Acton, T., Montelione, G., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.285 
• R-Value Work: 0.253 
• R-Value Observed: 0.253 

Literature

Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.

Kuzin, A.P., Zhou, W., Seetharaman, J., Cunningham, K., Janjua, H., Konover, K., Ma, L.C., Xiao, R., Acton, T., Montelione, G., Tong, L., Hunt, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 35.45 kDa 
• Atom Count: 2,116 
• Modelled Residue Count: 270 
• Deposited Residue Count: 310 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phage-like element PBSX protein xkdM	A, B	155	Bacillus subtilis	Mutation(s): 6  Gene Names: xkdM
UniProt
Find proteins for P54332 (Bacillus subtilis (strain 168)) Explore P54332  Go to UniProtKB:  P54332

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.285 
• R-Value Work: 0.253 
• R-Value Observed: 0.253 
• Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.255	α = 90
b = 84.255	β = 90
c = 46.694	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-05-23 
Deposition Author(s): Kuzin, A.P., Zhou, W., Seetharaman, J., Cunningham, K., Janjua, H., Konover, K., Ma, L.C., Xiao, R., Acton, T., Montelione, G., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2006-05-23
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary