4LT2

HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the EVAL software package


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP42942 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 5 weeks after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
1.9135.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.294α = 90
b = 77.294β = 90
c = 36.628γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray127CCDAPEX II CCD2013-05-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1225.1594.90.19314.221.67901750141.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0493.71.411.15.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2W1Y225.151.147901750136999.220.210410.207710.26507RANDOM22.839
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.79-0.791.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.972
r_dihedral_angle_4_deg25.101
r_dihedral_angle_3_deg16.398
r_dihedral_angle_1_deg7.141
r_long_range_B_refined6.171
r_long_range_B_other6.17
r_scangle_other3.805
r_scbond_it2.948
r_scbond_other2.945
r_mcangle_other2.406
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.972
r_dihedral_angle_4_deg25.101
r_dihedral_angle_3_deg16.398
r_dihedral_angle_1_deg7.141
r_long_range_B_refined6.171
r_long_range_B_other6.17
r_scangle_other3.805
r_scbond_it2.948
r_scbond_other2.945
r_mcangle_other2.406
r_mcangle_it2.404
r_angle_refined_deg1.815
r_mcbond_it1.572
r_mcbond_other1.552
r_angle_other_deg0.95
r_chiral_restr0.106
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms70
Heterogen Atoms35

Software

Software
Software NamePurpose
APEXdata collection
PHASERphasing
REFMACrefinement
EVAL15data reduction
EVAL15data scaling