model built against symmetry-free cryo-EM map of TRiC-ADP-AlFx
ELECTRON MICROSCOPY
Sample
BOVINE TRIC IN THE AMP- PNP STATE
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
16495
Reported Resolution (Å)
13.9
Resolution Method
Other Details
OUR MODELS DO NOT INCLUDE SOME REGIONS OF THE APICAL DOMAIN IN SEVERAL SUBUNITS, BECAUSE THE MAP IN THOSE REGIONS WAS NOT VERY WELL RESOLVED DUE TO TH ...
OUR MODELS DO NOT INCLUDE SOME REGIONS OF THE APICAL DOMAIN IN SEVERAL SUBUNITS, BECAUSE THE MAP IN THOSE REGIONS WAS NOT VERY WELL RESOLVED DUE TO THE DYNAMIC NATURE OF THOSE SUBUNITS. WE FITTED THE MODEL WITH THE OCCUPANCY REFINEMENT FEATURE IN DIREX. THIS BASICALLY DETERMINES WHETHER THERE IS SUFFICIENT DENSITY FOR EACH RESIDUE OR IF THERE IS REDUCED OR MISSING DENSITY. THE OCCUPANCY IS VALUE BETWEEN 0 AND 1. WE WROTE THIS VALUE INTO THE B-FACTOR COLUMN AS 100X(1-OCCUPANCY). THIS RESEMBLES A B-FACTOR BUT IS NOT EXACTLY THE SAME. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-1962. (DEPOSITION ID: 10237).
