X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529325% PEG 3350, 0.2M lithium sulfate, 0.1M Tris-HCl pH 8.5, 0.01M spermidine, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
238.55

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.172α = 110.02
b = 74.629β = 108.08
c = 74.295γ = 108.54
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rMSINGLE WAVELENGTH
21x-ray100CCDMARMOSAIC 225 mm CCDMMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.976ESRFID29
2SYNCHROTRONESRF BEAMLINE BM141.739, 0.954ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.775093.71111016
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.771.8195.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.7735.31105300555392.220.185290.182920.23044RANDOM29.955
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.820.14-0.080.130.250.89
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.318
r_dihedral_angle_4_deg17.762
r_dihedral_angle_3_deg15.616
r_dihedral_angle_1_deg5.366
r_scangle_it3.967
r_scbond_it2.533
r_angle_refined_deg1.454
r_mcangle_it1.378
r_mcbond_it0.889
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.318
r_dihedral_angle_4_deg17.762
r_dihedral_angle_3_deg15.616
r_dihedral_angle_1_deg5.366
r_scangle_it3.967
r_scbond_it2.533
r_angle_refined_deg1.454
r_mcangle_it1.378
r_mcbond_it0.889
r_nbtor_refined0.306
r_nbd_refined0.244
r_symmetry_vdw_refined0.21
r_symmetry_hbond_refined0.204
r_xyhbond_nbd_refined0.162
r_chiral_restr0.097
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_metal_ion_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9420
Nucleic Acid Atoms
Solvent Atoms833
Heterogen Atoms263

Software

Software
Software NamePurpose
SHARPphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling