2L16

Solution structure of Bacillus subtilits TatAd protein in DPC micelles


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-15N] TatAd-1, 90 % H2O-2, 10 % D2O-3, 0.01 % DSS-4, 50 mM sodium phosphate-5, 5 % DPC-6, 0.01 % sodium azide-790% H2O/10% D2O0.37.0ambient298
22D 1H-15N HSQC1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
32D 1H-13C HSQC1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
43D HNCA1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
53D HNCO1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
63D HNCACB1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
73D CBCA(CO)NH1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
83D HBHA(CO)NH1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
93D C(CO)NH1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
103D H(CCO)NH1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
113D HCCH-COSY1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
123D HCCH-TOCSY1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
133D 1H-15N NOESY1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
143D 1H-13C NOESY1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
153D HN(CA)CO1 mM [U-13C; U-15N] TatAd-8, 90 % H2O-9, 10 % D2O-10, 0.01 % DSS-11, 50 mM sodium phosphate-12, 5 % [U-2H] DPC-13, 0.01 % sodium azide-1490% H2O/10% D2O0.37.0ambient298
162D 1H-15N IPAP1 mM [U-15N] TatAd-15, 90 % H2O-16, 10 % D2O-17, 100 mM potassium phosphate-18, 5 % DPC-19, 0.01 % sodium azide-20, 9.0 mg in up to 500 ul G-tetra DNA-2190% H2O/10% D2O0.67.0ambient308
172D 1H-15N IPAP1 mM [U-15N] TatAd-22, 90 % H2O-23, 10 % D2O-24, 100 mM potassium phosphate-25, 5 % DPC-26, 0.01 % sodium azide-2790% H2O/10% D2O0.67.0ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance500
2BrukerAvance800
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with lowest energy as well as good correlation with RDC data
Conformers Calculated Total Number200
Conformers Submitted Total Number40
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisNMRViewJohnson, One Moon Scientific
3structure solutionX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore
4refinementX-PLOR_NIHSchwieters, Kuszewski, Tjandra and Clore