2G03

Structure of a putative cell filamentation protein from Neisseria meningitidis.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP627710% 2-propanol, 0.1M MES pH 6.0, 0.2M Calcium acetate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
5.3877.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.687α = 90
b = 148.687β = 90
c = 75.958γ = 120
Symmetry
Space GroupP 64 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDCUSTOM-MADE2006-02-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97923APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25093.92406524065
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.25778.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.2502283322833123293.930.185420.185420.184690.19847RANDOM58.601
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.25-2.12-4.256.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.19
r_dihedral_angle_4_deg18.924
r_dihedral_angle_3_deg16.449
r_dihedral_angle_1_deg6.036
r_scangle_it3.675
r_scbond_it2.639
r_mcangle_it1.506
r_angle_refined_deg1.426
r_mcbond_it1.041
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.19
r_dihedral_angle_4_deg18.924
r_dihedral_angle_3_deg16.449
r_dihedral_angle_1_deg6.036
r_scangle_it3.675
r_scbond_it2.639
r_mcangle_it1.506
r_angle_refined_deg1.426
r_mcbond_it1.041
r_nbtor_refined0.309
r_symmetry_vdw_refined0.261
r_nbd_refined0.211
r_xyhbond_nbd_refined0.184
r_symmetry_hbond_refined0.156
r_chiral_restr0.121
r_bond_refined_d0.016
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1456
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-2000data scaling
HKL-3000phasing
SHELXphasing
MLPHAREphasing
DMphasing
Omodel building
RESOLVEphasing
ARP/wARPmodel building
Cootmodel building