1SNR

Nitric oxide bound to Cu nitrite reductase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4291PEG4000, sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 4.0
Crystal Properties
Matthews coefficientSolvent content
2.0840.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.726α = 90
b = 102.595β = 90
c = 145.652γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2003-02-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-11.08SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32590.20.04415.97.615.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3682.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.3134.31910151003790.350.124690.12380.14136RANDOM13.148
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.1-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free9.856
r_dihedral_angle_1_deg7.261
r_sphericity_bonded3.822
r_scangle_it3.685
r_scbond_it2.464
r_mcangle_it1.662
r_angle_refined_deg1.418
r_mcbond_it1.091
r_rigid_bond_restr0.841
r_angle_other_deg0.785
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free9.856
r_dihedral_angle_1_deg7.261
r_sphericity_bonded3.822
r_scangle_it3.685
r_scbond_it2.464
r_mcangle_it1.662
r_angle_refined_deg1.418
r_mcbond_it1.091
r_rigid_bond_restr0.841
r_angle_other_deg0.785
r_symmetry_vdw_other0.282
r_nbd_other0.251
r_symmetry_vdw_refined0.221
r_nbd_refined0.203
r_xyhbond_nbd_refined0.128
r_symmetry_hbond_refined0.126
r_chiral_restr0.088
r_nbtor_other0.081
r_gen_planes_other0.014
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7687
Nucleic Acid Atoms
Solvent Atoms1099
Heterogen Atoms51

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling