3PMK

Crystal structure of the Vesicular Stomatitis Virus RNA free nucleoprotein/phosphoprotein complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101381	3001763	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101381	3001763	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101381	3001763	SCOP2B (2022-06-29)
C	SCOP2 Family	Rhabdovirus nucleocapsid protein	8101380	4001522	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Rhabdovirus nucleoprotein-like	8101381	3001763	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101381	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PF00945	e3pmkD1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: PF00945	ECOD (1.6)
A	PF00945	e3pmkA1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: PF00945	ECOD (1.6)
B	PF00945	e3pmkB1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: PF00945	ECOD (1.6)
C	PF00945	e3pmkC1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: PF00945	ECOD (1.6)
E	PF00945	e3pmkE1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: PF00945	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
D	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
A	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
A	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
B	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
B	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
C	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
C	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
E	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
E	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family
F [auth N], G [auth O], H [auth P], I [auth Q], J [auth R]	PF00922	Vesiculovirus phosphoprotein (Phosphoprotein)	Vesiculovirus phosphoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Nucleocapsid protein	RNA binding binding organic cyclic compound binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region helical viral capsid
F [auth N], G [auth O], H [auth P], I [auth Q], J [auth R]	Phosphoprotein	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	-	intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
A, B, C, D, E	IPR000448	Rhabdovirus nucleocapsid	Domain
A, B, C, D, E	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
A, B, C, D, E	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily
F [auth N], G [auth O], H [auth P], I [auth Q], J [auth R]	IPR037263	Phosphoprotein, central domain	Homologous Superfamily
F [auth N], G [auth O], H [auth P], I [auth Q], J [auth R]	IPR043036	Phosphoprotein, C-terminal domain, viral	Homologous Superfamily
F [auth N], G [auth O], H [auth P], I [auth Q], J [auth R]	IPR048220	Phosphoprotein, C-terminal domain, vesiculovirus	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.