3JC8

Architectural model of the type IVa pilus machine in a piliated state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
BB [auth Od]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
EB [auth Oe]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
HB [auth Of]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
KB [auth Og]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
NB [auth Oh]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
QB [auth Oi]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
SA [auth Oa]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
TB [auth Oj]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
VA [auth Ob]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
WB [auth Ok]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
YA [auth Oc]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
ZB [auth Ol]	SCOP2B Superfamily	General secretion pathway protein M EpsM-like	8092075	3001571	SCOP2B (2022-06-29)
CC [auth Pa]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
EC [auth Pb]	SCOP2 Family	PilP-like	8045781	4004682	SCOP2 (2022-06-29)
EC [auth Pb]	SCOP2 Superfamily	PilP-like	8091781	3002541	SCOP2 (2022-06-29)
GC [auth Pc]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
IC [auth Pd]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
KC [auth Pe]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
MC [auth Pf]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
OC [auth Pg]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
QC [auth Ph]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
SC [auth Pi]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
UC [auth Pj]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
WC [auth Pk]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
YC [auth Pl]	SCOP2B Superfamily	PilP-like	8091781	3002541	SCOP2B (2022-06-29)
PA [auth Ca]	SCOP2 Family	T2SS protein F-like	8047803	4005829	SCOP2 (2022-06-29)
PA [auth Ca]	SCOP2 Family	T2SS protein F-like	8053316	4005829	SCOP2 (2022-06-29)
PA [auth Ca]	SCOP2 Superfamily	T2SS protein F-like	8053317	3002176	SCOP2 (2022-06-29)
PA [auth Ca]	SCOP2 Superfamily	T2SS protein F-like	8053318	3002176	SCOP2 (2022-06-29)
QA [auth Cb]	SCOP2B Superfamily	T2SS protein F-like	8053318	3002176	SCOP2B (2022-06-29)
QA [auth Cb]	SCOP2B Superfamily	T2SS protein F-like	8053317	3002176	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth Aa]	PF00114,PF07963	e3jc8Aa1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
AA [auth A1]	PF00114,PF07963	e3jc8A11	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
B [auth Ab]	PF00114,PF07963	e3jc8Ab1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
BA [auth A2]	PF00114,PF07963	e3jc8A21	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
C [auth Ac]	PF00114,PF07963	e3jc8Ac1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
CA [auth A3]	PF00114,PF07963	e3jc8A31	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
D [auth Ad]	PF00114,PF07963	e3jc8Ad1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
DA [auth A4]	PF00114,PF07963	e3jc8A41	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
E [auth Ae]	PF00114,PF07963	e3jc8Ae1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
EA [auth A5]	PF00114,PF07963	e3jc8A51	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
F [auth Af]	PF00114,PF07963	e3jc8Af1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
FA [auth A6]	PF00114,PF07963	e3jc8A61	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
G [auth Ag]	PF00114,PF07963	e3jc8Ag1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
GA [auth A7]	PF00114,PF07963	e3jc8A71	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
H [auth Ah]	PF00114,PF07963	e3jc8Ah1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
HA [auth A8]	PF00114,PF07963	e3jc8A81	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
I [auth Ai]	PF00114,PF07963	e3jc8Ai1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
IA [auth A9]	PF00114,PF07963	e3jc8A91	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
J [auth Aj]	PF00114,PF07963	e3jc8Aj1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
K [auth Ak]	PF00114,PF07963	e3jc8Ak1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
L [auth Al]	PF00114,PF07963	e3jc8Al1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
M [auth Am]	PF00114,PF07963	e3jc8Am1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
N [auth An]	PF00114,PF07963	e3jc8An1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
O [auth Ao]	PF00114,PF07963	e3jc8Ao1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
P [auth Ap]	PF00114,PF07963	e3jc8Ap1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
Q [auth Aq]	PF00114,PF07963	e3jc8Aq1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
R [auth Ar]	PF00114,PF07963	e3jc8Ar1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
S [auth As]	PF00114,PF07963	e3jc8As1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
T [auth At]	PF00114,PF07963	e3jc8At1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
U [auth Au]	PF00114,PF07963	e3jc8Au1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
V [auth Av]	PF00114,PF07963	e3jc8Av1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
W [auth Aw]	PF00114,PF07963	e3jc8Aw1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
X [auth Ax]	PF00114,PF07963	e3jc8Ax1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
Y [auth Ay]	PF00114,PF07963	e3jc8Ay1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
Z [auth Az]	PF00114,PF07963	e3jc8Az1	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: PF00114,PF07963	ECOD (1.6)
JA [auth Ba]	PF05157	e3jc8Ba2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: PF05157	ECOD (1.6)
JA [auth Ba]	PF00437	e3jc8Ba1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00437	ECOD (1.6)
KA [auth Bb]	PF05157	e3jc8Bb2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: PF05157	ECOD (1.6)
KA [auth Bb]	PF00437	e3jc8Bb1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00437	ECOD (1.6)
LA [auth Bc]	PF05157	e3jc8Bc2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: PF05157	ECOD (1.6)
LA [auth Bc]	PF00437	e3jc8Bc1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00437	ECOD (1.6)
MA [auth Bd]	PF05157	e3jc8Bd2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: PF05157	ECOD (1.6)
MA [auth Bd]	PF00437	e3jc8Bd1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00437	ECOD (1.6)
NA [auth Be]	PF05157	e3jc8Be2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: PF05157	ECOD (1.6)
NA [auth Be]	PF00437	e3jc8Be1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00437	ECOD (1.6)
OA [auth Bf]	PF05157	e3jc8Bf2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: GSPII protein E N-terminal domain-like (From Topology)	T: GSPII protein E N-terminal domain-like	F: PF05157	ECOD (1.6)
OA [auth Bf]	PF00437	e3jc8Bf1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00437	ECOD (1.6)
AB [auth Nd]	PF05137	e3jc8Nd1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
DB [auth Ne]	PF05137	e3jc8Ne1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
GB [auth Nf]	PF05137	e3jc8Nf1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
JB [auth Ng]	PF05137	e3jc8Ng1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
MB [auth Nh]	PF05137	e3jc8Nh1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
PB [auth Ni]	PF05137	e3jc8Ni1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
RA [auth Na]	PF05137	e3jc8Na3	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
SB [auth Nj]	PF05137	e3jc8Nj1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
UA [auth Nb]	PF05137	e3jc8Nb1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
VB [auth Nk]	PF05137	e3jc8Nk1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
XA [auth Nc]	PF05137	e3jc8Nc1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
YB [auth Nl]	PF05137	e3jc8Nl1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF05137	ECOD (1.6)
BB [auth Od]	PF04350	e3jc8Od1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
BB [auth Od]	F_UNCLASSIFIED	e3jc8Od2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
EB [auth Oe]	PF04350	e3jc8Oe1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
EB [auth Oe]	F_UNCLASSIFIED	e3jc8Oe2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
HB [auth Of]	PF04350	e3jc8Of1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
HB [auth Of]	F_UNCLASSIFIED	e3jc8Of2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
KB [auth Og]	PF04350	e3jc8Og1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
KB [auth Og]	F_UNCLASSIFIED	e3jc8Og2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
NB [auth Oh]	PF04350	e3jc8Oh1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
NB [auth Oh]	F_UNCLASSIFIED	e3jc8Oh2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
QB [auth Oi]	PF04350	e3jc8Oi1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
QB [auth Oi]	F_UNCLASSIFIED	e3jc8Oi2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
SA [auth Oa]	PF04350	e3jc8Oa1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
SA [auth Oa]	F_UNCLASSIFIED	e3jc8Oa2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
TB [auth Oj]	PF04350	e3jc8Oj1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
TB [auth Oj]	F_UNCLASSIFIED	e3jc8Oj2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
VA [auth Ob]	PF04350	e3jc8Ob1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
VA [auth Ob]	F_UNCLASSIFIED	e3jc8Ob2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
WB [auth Ok]	PF04350	e3jc8Ok1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
WB [auth Ok]	F_UNCLASSIFIED	e3jc8Ok2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
YA [auth Oc]	PF04350	e3jc8Oc1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
YA [auth Oc]	F_UNCLASSIFIED	e3jc8Oc2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
ZB [auth Ol]	PF04350	e3jc8Ol1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: General secretion pathway protein M (EpsM) periplasmic domain-related (From Topology)	T: General secretion pathway protein M (EpsM) periplasmic domain-related	F: PF04350	ECOD (1.6)
ZB [auth Ol]	F_UNCLASSIFIED	e3jc8Ol2	A: extended segments	X: Preprotein translocase subunit YajC (From Topology)	H: Preprotein translocase subunit YajC (From Topology)	T: Preprotein translocase subunit YajC	F: F_UNCLASSIFIED	ECOD (1.6)
AC [auth Ml]	PF11104	e3jc8Ml2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
CB [auth Md]	PF11104	e3jc8Md1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
FB [auth Me]	PF11104	e3jc8Me2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
IB [auth Mf]	PF11104	e3jc8Mf1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
LB [auth Mg]	PF11104	e3jc8Mg2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
OB [auth Mh]	PF11104	e3jc8Mh2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
RB [auth Mi]	PF11104	e3jc8Mi1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
TA [auth Ma]	PF11104	e3jc8Ma2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
UB [auth Mj]	PF11104	e3jc8Mj1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
WA [auth Mb]	PF11104	e3jc8Mb2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
XB [auth Mk]	PF11104	e3jc8Mk1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
ZA [auth Mc]	PF11104	e3jc8Mc2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF11104	ECOD (1.6)
BC [auth Qa]	PF11741	e3jc8Qa4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
BC [auth Qa]	PF03958	e3jc8Qa3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
BC [auth Qa]	PF07660	e3jc8Qa1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
DC [auth Qb]	PF11741	e3jc8Qb4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
DC [auth Qb]	PF03958	e3jc8Qb3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
DC [auth Qb]	PF07660	e3jc8Qb1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
FC [auth Qc]	PF11741	e3jc8Qc4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
FC [auth Qc]	PF03958	e3jc8Qc3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
FC [auth Qc]	PF07660	e3jc8Qc1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
HC [auth Qd]	PF11741	e3jc8Qd4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
HC [auth Qd]	PF03958	e3jc8Qd3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
HC [auth Qd]	PF07660	e3jc8Qd1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
JC [auth Qe]	PF11741	e3jc8Qe4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
JC [auth Qe]	PF03958	e3jc8Qe3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
JC [auth Qe]	PF07660	e3jc8Qe1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
LC [auth Qf]	PF11741	e3jc8Qf4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
LC [auth Qf]	PF03958	e3jc8Qf3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
LC [auth Qf]	PF07660	e3jc8Qf1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
NC [auth Qg]	PF11741	e3jc8Qg4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
NC [auth Qg]	PF03958	e3jc8Qg3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
NC [auth Qg]	PF07660	e3jc8Qg1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
PC [auth Qh]	PF11741	e3jc8Qh4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
PC [auth Qh]	PF03958	e3jc8Qh3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
PC [auth Qh]	PF07660	e3jc8Qh1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
RC [auth Qi]	PF11741	e3jc8Qi4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
RC [auth Qi]	PF03958	e3jc8Qi3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
RC [auth Qi]	PF07660	e3jc8Qi1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
TC [auth Qj]	PF11741	e3jc8Qj4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
TC [auth Qj]	PF03958	e3jc8Qj3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
TC [auth Qj]	PF07660	e3jc8Qj1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
VC [auth Qk]	PF11741	e3jc8Qk4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
VC [auth Qk]	PF03958	e3jc8Qk3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
VC [auth Qk]	PF07660	e3jc8Qk1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
XC [auth Ql]	PF11741	e3jc8Ql4	A: beta sandwiches	X: HSP20-like	H: B2 domain of PilQ (From Topology)	T: B2 domain of PilQ	F: PF11741	ECOD (1.6)
XC [auth Ql]	PF03958	e3jc8Ql3	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Ring-building motif II in type III secretion system (From Topology)	T: Ring-building motif II in type III secretion system	F: PF03958	ECOD (1.6)
XC [auth Ql]	PF07660	e3jc8Ql1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: PF07660	ECOD (1.6)
CC [auth Pa]	PF04351	e3jc8Pa1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
EC [auth Pb]	PF04351	e3jc8Pb1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
GC [auth Pc]	PF04351	e3jc8Pc1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
IC [auth Pd]	PF04351	e3jc8Pd1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
KC [auth Pe]	PF04351	e3jc8Pe1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
MC [auth Pf]	PF04351	e3jc8Pf1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
OC [auth Pg]	PF04351	e3jc8Pg1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
QC [auth Ph]	PF04351	e3jc8Ph1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
SC [auth Pi]	PF04351	e3jc8Pi1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
UC [auth Pj]	PF04351	e3jc8Pj1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
WC [auth Pk]	PF04351	e3jc8Pk1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
YC [auth Pl]	PF04351	e3jc8Pl1	A: beta barrels	X: GspC HR domain/PilP-like (From Topology)	H: GspC HR domain/PilP-like (From Topology)	T: GspC HR domain/PilP-like	F: PF04351	ECOD (1.6)
AD [auth Tb]	F_UNCLASSIFIED	e3jc8Tb2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
AD [auth Tb]	PF01476	e3jc8Tb1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
BD [auth Tc]	F_UNCLASSIFIED	e3jc8Tc2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
BD [auth Tc]	PF01476	e3jc8Tc1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
CD [auth Td]	F_UNCLASSIFIED	e3jc8Td2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
CD [auth Td]	PF01476	e3jc8Td1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
DD [auth Te]	F_UNCLASSIFIED	e3jc8Te2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
DD [auth Te]	PF01476	e3jc8Te1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
ED [auth Tf]	F_UNCLASSIFIED	e3jc8Tf2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
ED [auth Tf]	PF01476	e3jc8Tf1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
FD [auth Tg]	F_UNCLASSIFIED	e3jc8Tg2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
FD [auth Tg]	PF01476	e3jc8Tg1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
GD [auth Th]	F_UNCLASSIFIED	e3jc8Th2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
GD [auth Th]	PF01476	e3jc8Th1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
HD [auth Ti]	F_UNCLASSIFIED	e3jc8Ti2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
HD [auth Ti]	PF01476	e3jc8Ti1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
ID [auth Tj]	F_UNCLASSIFIED	e3jc8Tj2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
ID [auth Tj]	PF01476	e3jc8Tj1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
JD [auth Tk]	F_UNCLASSIFIED	e3jc8Tk2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
JD [auth Tk]	PF01476	e3jc8Tk1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
KD [auth Tl]	F_UNCLASSIFIED	e3jc8Tl2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
KD [auth Tl]	PF01476	e3jc8Tl1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
ZC [auth Ta]	F_UNCLASSIFIED	e3jc8Ta2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: F_UNCLASSIFIED	ECOD (1.6)
ZC [auth Ta]	PF01476	e3jc8Ta1	A: alpha arrays	X: HTH	H: LysM domain (From Topology)	T: LysM domain	F: PF01476	ECOD (1.6)
PA [auth Ca]	PF00482	e3jc8Ca1	A: alpha bundles	X: V-type ATP synthase subunit C	H: Toxin coregulated pilus biosynthesis protein E cytoplasmic domain (From Topology)	T: Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	F: PF00482	ECOD (1.6)
QA [auth Cb]	PF00482	e3jc8Cb1	A: alpha bundles	X: V-type ATP synthase subunit C	H: Toxin coregulated pilus biosynthesis protein E cytoplasmic domain (From Topology)	T: Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	F: PF00482	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	PF00437	Type II/IV secretion system protein (T2SSE)	Type II/IV secretion system protein	-	Family
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	PF05157	MshEN domain (MshEN)	MshEN domain	This domain is found at the N-terminus of the Type II secretion secretion system protein E (GspE) and type IV pilus extensin ATPase PilB and near the C-terminus of the glycosyltransferase NfrB. A variant of this domain, called MshEN, binds cyclic di- ...	This domain is found at the N-terminus of the Type II secretion secretion system protein E (GspE) and type IV pilus extensin ATPase PilB and near the C-terminus of the glycosyltransferase NfrB. A variant of this domain, called MshEN, binds cyclic di-GMP [4,6,7], which modulates the activity of the respective protein. The structure of this domain is now known [1,2,4].	Domain
AB [auth Nd], DB [auth Ne], GB [auth Nf], JB [auth Ng], MB [auth Nh], AB [auth Nd], DB [auth Ne], GB [auth Nf], JB [auth Ng], MB [auth Nh], PB [auth Ni], RA [auth Na], SB [auth Nj], UA [auth Nb], VB [auth Nk], XA [auth Nc], YB [auth Nl]	PF05137	Fimbrial assembly protein (PilN) (PilN)	Fimbrial assembly protein (PilN)	-	Family
BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], QB [auth Oi], SA [auth Oa], TB [auth Oj], VA [auth Ob], WB [auth Ok], YA [auth Oc], ZB [auth Ol]	PF04350	Pilus assembly protein, PilO (PilO)	Pilus assembly protein, PilO	-	Family
AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], OB [auth Mh], RB [auth Mi], TA [auth Ma], UB [auth Mj], WA [auth Mb], XB [auth Mk], ZA [auth Mc]	PF11104	Type IV pilus assembly protein PilM; (PilM_2)	Type IV pilus assembly protein PilM;	-	Family
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	PF11741	AMIN domain (AMIN)	AMIN domain	-	Family
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	PF03958	Bacterial type II/III secretion system short domain (Secretin_N)	Bacterial type II/III secretion system short domain	This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.	Domain
CC [auth Pa], EC [auth Pb], GC [auth Pc], IC [auth Pd], KC [auth Pe], CC [auth Pa], EC [auth Pb], GC [auth Pc], IC [auth Pd], KC [auth Pe], MC [auth Pf], OC [auth Pg], QC [auth Ph], SC [auth Pi], UC [auth Pj], WC [auth Pk], YC [auth Pl]	PF04351	Pilus assembly protein, PilP (PilP)	Pilus assembly protein, PilP	-	Family
AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], FD [auth Tg], GD [auth Th], HD [auth Ti], ID [auth Tj], JD [auth Tk], KD [auth Tl], ZC [auth Ta]	PF01476	LysM domain (LysM)	LysM domain	The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation [1]. This domain may have a general peptidoglycan binding function. The structure of this domain is known [2].	Domain
PA [auth Ca], QA [auth Cb]	PF00482	Type II secretion system (T2SS), protein F (T2SSF)	Type II secretion system (T2SS), protein F	The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the T ...	The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella [1]. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth Aa], AA [auth A1], B [auth Ab], BA [auth A2], C [auth Ac], A [auth Aa], AA [auth A1], B [auth Ab], BA [auth A2], C [auth Ac], CA [auth A3], D [auth Ad], DA [auth A4], E [auth Ae], EA [auth A5], F [auth Af], FA [auth A6], G [auth Ag], GA [auth A7], H [auth Ah], HA [auth A8], I [auth Ai], IA [auth A9], J [auth Aj], K [auth Ak], L [auth Al], M [auth Am], N [auth An], O [auth Ao], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	PilA	-	-	-
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	Type IV-A pilus assembly ATPase PilB	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity cation binding metal ion binding	cellular component biogenesis cellular component organization cellular component assembly cell projection organization cellular process pilus assembly cellular component organization or biogenesis pilus organization cell projection assembly	intracellular anatomical structure cytoplasm cellular anatomical entity
AB [auth Nd], DB [auth Ne], GB [auth Nf], JB [auth Ng], MB [auth Nh], AB [auth Nd], DB [auth Ne], GB [auth Nf], JB [auth Ng], MB [auth Nh], PB [auth Ni], RA [auth Na], SB [auth Nj], UA [auth Nb], VB [auth Nk], XA [auth Nc], YB [auth Nl]	PilN	-	-	membrane cellular anatomical entity
BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], QB [auth Oi], SA [auth Oa], TB [auth Oj], VA [auth Ob], WB [auth Ok], YA [auth Oc], ZB [auth Ol]	PilO	-	cellular process type IV pilus-dependent motility cell motility cellular component biogenesis cellular component organization cellular component assembly cell projection organization pilus assembly cellular component organization or biogenesis pilus organization type IV pilus assembly cell projection assembly	-
AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], OB [auth Mh], RB [auth Mi], TA [auth Ma], UB [auth Mj], WA [auth Mb], XB [auth Mk], ZA [auth Mc]	Type IV pilus biogenesis protein PilM	-	cellular process cell division	-
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	PilQ	-	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport cellular macromolecule localization macromolecule localization cellular process	cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane cellular anatomical entity
CC [auth Pa], EC [auth Pb], GC [auth Pc], IC [auth Pd], KC [auth Pe], CC [auth Pa], EC [auth Pb], GC [auth Pc], IC [auth Pd], KC [auth Pe], MC [auth Pf], OC [auth Pg], QC [auth Ph], SC [auth Pi], UC [auth Pj], WC [auth Pk], YC [auth Pl]	PilP	-	-	-
AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], FD [auth Tg], GD [auth Th], HD [auth Ti], ID [auth Tj], JD [auth Tk], KD [auth Tl], ZC [auth Ta]	LysM domain protein	-	-	-
PA [auth Ca], QA [auth Cb]	Type 4 fimbrial assembly protein PilC	-	-	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	IPR001482	Type II/IV secretion system domain	Domain
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	IPR003593	AAA+ ATPase domain	Domain
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	IPR013374	ATPase, type IV, pilus assembly, PilB	Family
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	IPR037257	Type II secretion system protein GspE, N-terminal superfamily	Homologous Superfamily
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	IPR007831	Type II secretion system protein GspE, N-terminal	Domain
JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], JA [auth Ba], KA [auth Bb], LA [auth Bc], MA [auth Bd], NA [auth Be], OA [auth Bf]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
AB [auth Nd], DB [auth Ne], GB [auth Nf], JB [auth Ng], MB [auth Nh], AB [auth Nd], DB [auth Ne], GB [auth Nf], JB [auth Ng], MB [auth Nh], PB [auth Ni], RA [auth Na], SB [auth Nj], UA [auth Nb], VB [auth Nk], XA [auth Nc], YB [auth Nl]	IPR007813	Type IV pilus inner membrane component PilN	Family
BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], QB [auth Oi], SA [auth Oa], TB [auth Oj], VA [auth Ob], WB [auth Ok], YA [auth Oc], ZB [auth Ol]	IPR007445	Type IV pilus inner membrane component PilO	Family
BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], BB [auth Od], EB [auth Oe], HB [auth Of], KB [auth Og], NB [auth Oh], QB [auth Oi], SA [auth Oa], TB [auth Oj], VA [auth Ob], WB [auth Ok], YA [auth Oc], ZB [auth Ol]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], OB [auth Mh], RB [auth Mi], TA [auth Ma], UB [auth Mj], WA [auth Mb], XB [auth Mk], ZA [auth Mc]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], OB [auth Mh], RB [auth Mi], TA [auth Ma], UB [auth Mj], WA [auth Mb], XB [auth Mk], ZA [auth Mc]	IPR003494	SHS2 domain inserted in FtsA	Domain
AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], AC [auth Ml], CB [auth Md], FB [auth Me], IB [auth Mf], LB [auth Mg], OB [auth Mh], RB [auth Mi], TA [auth Ma], UB [auth Mj], WA [auth Mb], XB [auth Mk], ZA [auth Mc]	IPR005883	Type IV pilus inner membrane component PilM	Family
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR005644	NolW-like	Domain
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR004846	Type II/III secretion system, secretin-like domain	Domain
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR038591	NolW-like superfamily	Homologous Superfamily
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR011662	Secretin/TonB, short N-terminal domain	Domain
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR001775	GspD/PilQ family	Family
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR021731	AMIN domain	Domain
BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], BC [auth Qa], DC [auth Qb], FC [auth Qc], HC [auth Qd], JC [auth Qe], LC [auth Qf], NC [auth Qg], PC [auth Qh], RC [auth Qi], TC [auth Qj], VC [auth Qk], XC [auth Ql]	IPR013355	Type IV pilus secretin PilQ	Family
CC [auth Pa], EC [auth Pb], GC [auth Pc], IC [auth Pd], KC [auth Pe], CC [auth Pa], EC [auth Pb], GC [auth Pc], IC [auth Pd], KC [auth Pe], MC [auth Pf], OC [auth Pg], QC [auth Ph], SC [auth Pi], UC [auth Pj], WC [auth Pk], YC [auth Pl]	IPR007446	Type IV pilus inner membrane component PilP	Family
AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], FD [auth Tg], GD [auth Th], HD [auth Ti], ID [auth Tj], JD [auth Tk], KD [auth Tl], ZC [auth Ta]	IPR036779	LysM domain superfamily	Homologous Superfamily
AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], AD [auth Tb], BD [auth Tc], CD [auth Td], DD [auth Te], ED [auth Tf], FD [auth Tg], GD [auth Th], HD [auth Ti], ID [auth Tj], JD [auth Tk], KD [auth Tl], ZC [auth Ta]	IPR018392	LysM domain	Domain
PA [auth Ca], QA [auth Cb]	IPR042094	Type II secretion system GspF domain superfamily	Homologous Superfamily
PA [auth Ca], QA [auth Cb]	IPR018076	Type II secretion system protein GspF domain	Domain
PA [auth Ca], QA [auth Cb]	IPR003004	GspF/PilC family	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth Aa], AA [auth A1], B [auth Ab], BA [auth A2], C [auth Ac], A [auth Aa], AA [auth A1], B [auth Ab], BA [auth A2], C [auth Ac], CA [auth A3], D [auth Ad], DA [auth A4], E [auth Ae], EA [auth A5], F [auth Af], FA [auth A6], G [auth Ag], GA [auth A7], H [auth Ah], HA [auth A8], I [auth Ai], IA [auth A9], J [auth Aj], K [auth Ak], L [auth Al], M [auth Am], N [auth An], O [auth Ao], P [auth Ap], Q [auth Aq], R [auth Ar], S [auth As], T [auth At], U [auth Au], V [auth Av], W [auth Aw], X [auth Ax], Y [auth Ay], Z [auth Az]	MEA	Parent Component: PHE RESID: AA0065 PSI-MOD : N-methyl-L-phenylalanine MOD:00074