8V83

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Saccharomyces cerevisiae S288C 25S ribosomal RNA---
J [auth E]60S ribosomal protein L6-A
K [auth F]60S ribosomal protein L7-A
L [auth G]Large ribosomal subunit protein eL8A
M [auth H]Large ribosomal subunit protein uL6A
N [auth I]Ribosome biogenesis protein NSA1-
O [auth J]rRNA-processing protein EBP2
P [auth K]Proteasome-interacting protein CIC1
Q [auth L]60S ribosomal protein L13-A
R [auth M]60S ribosomal protein L14-A
S [auth N]Large ribosomal subunit protein eL15A
B [auth 2]Saccharomyces cerevisiae S288C 5.8S ribosomal RNA---
T [auth O]Large ribosomal subunit protein uL13A
U [auth P]60S ribosomal protein L17-A
V [auth Q]60S ribosomal protein L18-A
W [auth R]Protein MAK16-
X [auth S]Large ribosomal subunit protein eL20A
Y [auth T]Ribosomal RNA-processing protein 15-
Z [auth V]60S ribosomal protein L23-A
AA [auth W]Ribosome assembly factor MRT4
BA [auth Y]60S ribosomal protein L26-A
CA [auth Z]Ribosome biogenesis protein SSF1
C [auth 6]Saccharomyces cerevisiae ITS-2---
DA [auth a]Large ribosomal subunit protein uL1A
EA [auth b]Nucleolar GTP-binding protein 1
FA [auth e]60S ribosomal protein L32
GA [auth f]60S ribosomal protein L33-A
HA [auth h]60S ribosomal protein L35-A
IA [auth i]60S ribosomal protein L36-A
JA [auth j]60S ribosomal protein L37-A
KA [auth l]60S ribosome subunit biogenesis protein NIP7
LA [auth m]Ribosome biogenesis protein ERB1
MA [auth n]Pescadillo homolog
D [auth 7]60S ribosomal subunit assembly/export protein LOC1
NA [auth o]Ribosome biogenesis protein 15
OA [auth q]25S rRNA (cytosine(2870)-C(5))-methyltransferase
PA [auth r]Ribosome biogenesis protein NSA2-
QA [auth t]Ribosome biogenesis protein RLP7
RA [auth u]Ribosome biogenesis protein RLP24
SA [auth v]Nucleolar protein 16-
TA [auth w]Ribosomal RNA-processing protein 1-
UA [auth x]Ribosome production factor 1
VA [auth y]Eukaryotic translation initiation factor 6
E [auth 8]Ribosomal RNA-processing protein 14
F [auth A]Ribosome biogenesis protein BRX1
G [auth B]60S ribosomal protein L3
H [auth C]60S ribosomal protein L4-A
I [auth D]ATP-dependent RNA helicase HAS1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
J [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
J [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth E]IPR000915Large ribosomal subunit protein eL6Family
K [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
K [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
K [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
K [auth F]IPR039699Large ribosomal subunit protein uL30Family
K [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
K [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
K [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
L [auth G]IPR001921Large ribosomal subunit protein eL8Family
L [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
L [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
M [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
M [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
M [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
M [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
N [auth I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
N [auth I]IPR037379WDR74/Nsa1Family
O [auth J]IPR008610Eukaryotic rRNA processingFamily
P [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
P [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
Q [auth L]IPR001380Large ribosomal subunit protein eL13Family
Q [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
R [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth M]IPR039660Large ribosomal subunit protein eL14Family
R [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
R [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
R [auth M]IPR005824KOWDomain
S [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
S [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
S [auth N]IPR000439Large ribosomal subunit protein eL15Family
T [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
T [auth O]IPR005822Large ribosomal subunit protein uL13Family
T [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
T [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
U [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
U [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
U [auth P]IPR001063Large ribosomal subunit protein uL22Family
U [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
V [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
V [auth Q]IPR000039Large ribosomal subunit protein eL18Family
V [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth R]IPR006958Mak16 proteinFamily
W [auth R]IPR029004Ribosomal eL28/Mak16Domain
X [auth S]IPR028877Large ribosomal subunit protein eL20Family
X [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
X [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
Y [auth T]IPR012459Ribosomal RNA-processing protein 15Family
Z [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Z [auth V]IPR000218Large ribosomal subunit protein uL14Family
Z [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
AA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
AA [auth W]IPR001790Large ribosomal subunit protein uL10Family
AA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
AA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
AA [auth W]IPR033867Ribosome assembly factor Mrt4Family
BA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
BA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth Y]IPR005824KOWDomain
BA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
BA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
CA [auth Z]IPR007109Brix domainDomain
CA [auth Z]IPR045112Protein Peter Pan-likeFamily
DA [auth a]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
DA [auth a]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
DA [auth a]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
DA [auth a]IPR002143Large ribosomal subunit protein uL1Family
DA [auth a]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
EA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
EA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
EA [auth b]IPR012973NOG, C-terminalDomain
EA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
EA [auth b]IPR041623NOG1, N-terminal helical domainDomain
EA [auth b]IPR006073GTP binding domainDomain
EA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
FA [auth e]IPR001515Large ribosomal subunit protein eL32Family
FA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
GA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
GA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth f]IPR001780Large ribosomal subunit protein eL33Family
GA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
HA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
HA [auth h]IPR001854Large ribosomal subunit protein uL29Family
HA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
HA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
IA [auth i]IPR000509Large ribosomal subunit protein eL36Family
IA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
JA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JA [auth j]IPR001569Large ribosomal subunit protein eL37Family
JA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
JA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KA [auth l]IPR015947PUA-like superfamilyHomologous Superfamily
KA [auth l]IPR005155UPF0113, PUA domainDomain
KA [auth l]IPR016686Ribosome biogenesis factor, NIP7Family
KA [auth l]IPR036974PUA domain superfamilyHomologous Superfamily
KA [auth l]IPR04059860S ribosome subunit biogenesis protein NIP7, pre-PUA domainDomain
KA [auth l]IPR002478PUA domainDomain
LA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
LA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
LA [auth m]IPR028598WD repeat BOP1/Erb1Family
LA [auth m]IPR001680WD40 repeatRepeat
LA [auth m]IPR012953BOP1, N-terminal domainDomain
LA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth n]IPR010613PescadilloFamily
MA [auth n]IPR001357BRCT domainDomain
MA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
D [auth 7]IPR03765060S ribosomal subunit assembly/export protein Loc1Family
NA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
NA [auth o]IPR000504RNA recognition motif domainDomain
NA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
NA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
OA [auth q]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
OA [auth q]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
OA [auth q]IPR023267RNA (C5-cytosine) methyltransferaseFamily
OA [auth q]IPR011023Nop2pDomain
OA [auth q]IPR018314Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteConserved Site
OA [auth q]IPR031341Ribosomal RNA small subunit methyltransferase F, N-terminalDomain
OA [auth q]IPR023273RNA (C5-cytosine) methyltransferase, NOP2Family
OA [auth q]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
PA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
PA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
QA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
QA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
QA [auth t]IPR039699Large ribosomal subunit protein uL30Family
QA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
QA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
RA [auth u]IPR011017TRASH domainDomain
RA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
RA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
SA [auth v]IPR019002Ribosome biogenesis protein Nop16Family
TA [auth w]IPR010301Ribosomal RNA processing protein 1Family
UA [auth x]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
UA [auth x]IPR007109Brix domainDomain
VA [auth y]IPR002769Translation initiation factor IF6Family
E [auth 8]IPR029190Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domainDomain
E [auth 8]IPR029188Ribosomal RNA-processing protein 14, N-terminalDomain
E [auth 8]IPR007019Surfeit locus 6Family
F [auth A]IPR026532Ribosome biogenesis protein BRX1Family
F [auth A]IPR007109Brix domainDomain
G [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
G [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
G [auth B]IPR000597Large ribosomal subunit protein uL3Family
G [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
H [auth C]IPR002136Large ribosomal subunit protein uL4Family
H [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
H [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
H [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
I [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
I [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
I [auth D]IPR011545DEAD/DEAH box helicase domainDomain
I [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth D]IPR001650Helicase, C-terminal domain-likeDomain
I [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
I [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
I [auth D]IPR025313Domain of unknown function DUF4217Domain