9LXG | pdb_00009lxg

Filamin A repeat 21 in complex with LARP4 Ala269-Asn281 peptide

PDB DOI: https://doi.org/10.2210/pdb9LXG/pdb

Classification: PROTEIN BINDING
Organism(s): Esselenichthys carli
Expression System: Esselenichthys carli
Mutation(s): No

Deposited: 2025-02-18 Released: 2025-03-05
Deposition Author(s): Mao, Z.F., Yuanyuan, D.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.46 Å
R-Value Free:
0.259 (Depositor), 0.218 (DCC)
R-Value Work:
0.204 (Depositor), 0.205 (DCC)
R-Value Observed:
0.207 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Filamin A repeat 21 in complex with LARP4 Ala269-Asn281 peptide

Mao, Z.F., Yuanyuan, D.

To be published.

Macromolecule Content

Total Structure Weight: 11.68 kDa
Atom Count: 812
Modelled Residue Count: 109
Deposited Residue Count: 114
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Filamin-A	A	101	Esselenichthys carli	Mutation(s): 0 Gene Names: FLNA, FLN, FLN1
UniProt & NIH Common Fund Data Resources
Find proteins for P21333 (Homo sapiens) Explore P21333 Go to UniProtKB: P21333
PHAROS: P21333 GTEx: ENSG00000196924
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P21333
Sequence Annotations Expand
Reference Sequence LOADING

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
La-related protein 4	B	13	Esselenichthys carli	Mutation(s): 0 Gene Names: Larp4
UniProt
Find proteins for Q8BWW4 (Mus musculus) Explore Q8BWW4 Go to UniProtKB: Q8BWW4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8BWW4
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.46 Å
R-Value Free: 0.259 (Depositor), 0.218 (DCC)
R-Value Work: 0.204 (Depositor), 0.205 (DCC)
R-Value Observed: 0.207 (Depositor)

Space Group: P 3₁ 1 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.04	α = 90
b = 78.04	β = 90
c = 32.36	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-05

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32070777

Revision History (Full details and data files)

Version 1.0: 2025-03-05
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.