Download MendeleyA family of archaeal hibernation factors that bind in tandem and protect ribosomes in dormant cells
Nissley, A.J., Williams, M.C., Shulgina, Y., Kivimae, R.W., Nayak, D.D., Cate, J.H.D.(2026) bioRxiv
9ZNI | pdb_00009zni
Cryo-EM structure of the Methanosarcina acetivorans 70S ribosome in complex with SriC and SriD
- PDB DOI: https://doi.org/10.2210/pdb9ZNI/pdb
- EM Map EMD-74448: EMDB EMDataResource
- Classification: RIBOSOME
- Organism(s): Methanosarcina acetivorans
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2025-12-12 Released: 2026-01-28
- Funding Organization(s): National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.89 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Starting Model: other
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
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Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CBS domain-containing protein | D [auth 6] | 281 | Methanosarcina acetivorans | Mutation(s): 0 Gene Names: HA338_08685 |  |
UniProt | |||||
Find proteins for A0A832SGR1 (Methanosarcina acetivorans) Explore A0A832SGR1 Go to UniProtKB: A0A832SGR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832SGR1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CBS domain-containing protein | E [auth 7] | 274 | Methanosarcina acetivorans | Mutation(s): 0 Gene Names: MA_4651 |  |
UniProt | |||||
Find proteins for Q8TH71 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TH71 Go to UniProtKB: Q8TH71 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TH71 | ||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL2 | F [auth AA] | 238 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU4 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU4 Go to UniProtKB: Q8TRU4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU4 | ||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL3 | G [auth AB] | 337 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU7 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU7 Go to UniProtKB: Q8TRU7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU7 | ||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL4 | H [auth AC] | 253 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU6 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU6 Go to UniProtKB: Q8TRU6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU6 | ||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL5 | I [auth AD] | 165 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT4 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT4 Go to UniProtKB: Q8TRT4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT4 | ||||
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Entity ID: 10 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL6 | J [auth AE] | 176 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT1 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT1 Go to UniProtKB: Q8TRT1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT1 | ||||
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Entity ID: 11 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL8 | K [auth AF] | 120 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TQL9 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TQL9 Go to UniProtKB: Q8TQL9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TQL9 | ||||
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Entity ID: 12 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL13 | L [auth AG] | 143 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TT43 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TT43 Go to UniProtKB: Q8TT43 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TT43 | ||||
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Entity ID: 13 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL14 | M [auth AH] | 132 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT7 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT7 Go to UniProtKB: Q8TRT7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT7 | ||||
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Entity ID: 14 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL15 | N [auth AI] | 140 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRS5 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRS5 Go to UniProtKB: Q8TRS5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRS5 | ||||
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Entity ID: 15 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL15 | O [auth AJ] | 196 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TPX0 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TPX0 Go to UniProtKB: Q8TPX0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TPX0 | ||||
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Entity ID: 16 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL16 | P [auth AK] | 173 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TU90 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TU90 Go to UniProtKB: Q8TU90 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TU90 | ||||
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Entity ID: 17 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL18 | Q [auth AL] | 174 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRS8 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRS8 Go to UniProtKB: Q8TRS8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRS8 | ||||
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Entity ID: 18 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL18 | R [auth AM] | 126 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TT44 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TT44 Go to UniProtKB: Q8TT44 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TT44 | ||||
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Entity ID: 19 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL19 | S [auth AN] | 151 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A832W9G6 (Methanosarcina acetivorans) Explore A0A832W9G6 Go to UniProtKB: A0A832W9G6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832W9G6 | ||||
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Entity ID: 20 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL20 | T [auth AO] | 61 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TIN5 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TIN5 Go to UniProtKB: Q8TIN5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TIN5 | ||||
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Entity ID: 21 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL21 | U [auth AP] | 97 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TQU3 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TQU3 Go to UniProtKB: Q8TQU3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TQU3 | ||||
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Entity ID: 22 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL22 | V [auth AQ] | 151 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU2 Go to UniProtKB: Q8TRU2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU2 | ||||
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Entity ID: 23 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL23 | W [auth AR] | 82 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU5 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU5 Go to UniProtKB: Q8TRU5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU5 | ||||
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Entity ID: 24 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL24 | X [auth AS] | 119 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT6 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT6 Go to UniProtKB: Q8TRT6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT6 | ||||
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Entity ID: 25 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL24 | Y [auth AT] | 62 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TQL7 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TQL7 Go to UniProtKB: Q8TQL7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TQL7 | ||||
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Entity ID: 26 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL29 | Z [auth AU] | 67 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU0 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU0 Go to UniProtKB: Q8TRU0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU0 | ||||
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Entity ID: 27 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL30 | AA [auth AV] | 153 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRS6 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRS6 Go to UniProtKB: Q8TRS6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRS6 | ||||
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Entity ID: 28 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL30 | BA [auth AW] | 99 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRB9 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRB9 Go to UniProtKB: Q8TRB9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRB9 | ||||
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Entity ID: 29 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL31 | CA [auth AX] | 89 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TIN3 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TIN3 Go to UniProtKB: Q8TIN3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TIN3 | ||||
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Entity ID: 30 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL32 | DA [auth AY] | 129 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT0 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT0 Go to UniProtKB: Q8TRT0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT0 | ||||
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Entity ID: 31 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL37 | EA [auth AZ] | 56 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TL48 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TL48 Go to UniProtKB: Q8TL48 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TL48 | ||||
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Entity ID: 32 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL39 | FA [auth Aa] | 51 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TIN2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TIN2 Go to UniProtKB: Q8TIN2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TIN2 | ||||
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Entity ID: 33 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL40 | GA [auth Ab] | 49 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TJ19 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TJ19 Go to UniProtKB: Q8TJ19 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TJ19 | ||||
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Entity ID: 34 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL42 | HA [auth Ac] | 92 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A832W9V9 (Methanosarcina acetivorans) Explore A0A832W9V9 Go to UniProtKB: A0A832W9V9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832W9V9 | ||||
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Entity ID: 35 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL43 | IA [auth Ad] | 94 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A832SMV9 (Methanosarcina acetivorans) Explore A0A832SMV9 Go to UniProtKB: A0A832SMV9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832SMV9 | ||||
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Entity ID: 36 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS1 | JA [auth BA] | 203 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TKI9 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TKI9 Go to UniProtKB: Q8TKI9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TKI9 | ||||
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Entity ID: 37 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS2 | KA [auth BB] | 225 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TT39 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TT39 Go to UniProtKB: Q8TT39 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TT39 | ||||
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Entity ID: 38 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS3 | LA [auth BC] | 318 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU1 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU1 Go to UniProtKB: Q8TRU1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU1 | ||||
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Entity ID: 39 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS4 | MA [auth BD] | 218 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRR1 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRR1 Go to UniProtKB: Q8TRR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRR1 | ||||
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Entity ID: 40 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS4 | NA [auth BE] | 235 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT5 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT5 Go to UniProtKB: Q8TRT5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT5 | ||||
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Entity ID: 41 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS5 | OA [auth BF] | 209 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRS7 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRS7 Go to UniProtKB: Q8TRS7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRS7 | ||||
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Entity ID: 42 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS6 | PA [auth BG] | 136 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TQL4 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TQL4 Go to UniProtKB: Q8TQL4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TQL4 | ||||
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Entity ID: 43 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS7 | QA [auth BH] | 189 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRC2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRC2 Go to UniProtKB: Q8TRC2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRC2 | ||||
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Entity ID: 44 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS8 | RA [auth BI] | 130 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT2 Go to UniProtKB: Q8TRT2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT2 | ||||
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Entity ID: 45 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS9 | SA [auth BJ] | 134 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TT42 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TT42 Go to UniProtKB: Q8TT42 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TT42 | ||||
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Entity ID: 46 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS8 | TA [auth BK] | 125 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TS82 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TS82 Go to UniProtKB: Q8TS82 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TS82 | ||||
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Entity ID: 47 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS10 | UA [auth BL] | 102 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P61929 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore P61929 Go to UniProtKB: P61929 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61929 | ||||
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Entity ID: 48 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS11 | VA [auth BM] | 126 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRR0 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRR0 Go to UniProtKB: Q8TRR0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRR0 | ||||
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Entity ID: 49 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS12 | WA [auth BN] | 142 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRC1 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRC1 Go to UniProtKB: Q8TRC1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRC1 | ||||
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Entity ID: 50 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS13 | XA [auth BO] | 162 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRR2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRR2 Go to UniProtKB: Q8TRR2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRR2 | ||||
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Entity ID: 51 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS14 | YA [auth BP] | 50 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT3 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT3 Go to UniProtKB: Q8TRT3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT3 | ||||
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Entity ID: 52 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS15 | ZA [auth BQ] | 152 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TS56 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TS56 Go to UniProtKB: Q8TS56 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TS56 | ||||
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Entity ID: 53 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS17A | AB [auth BR] | 109 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRT8 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRT8 Go to UniProtKB: Q8TRT8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRT8 | ||||
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Entity ID: 54 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS17 | BB [auth BS] | 64 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8THP2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8THP2 Go to UniProtKB: Q8THP2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8THP2 | ||||
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Entity ID: 55 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS19 | CB [auth BT] | 136 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TRU3 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TRU3 Go to UniProtKB: Q8TRU3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TRU3 | ||||
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Entity ID: 56 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS19 | DB [auth BU] | 149 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A832W9Q0 (Methanosarcina acetivorans) Explore A0A832W9Q0 Go to UniProtKB: A0A832W9Q0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832W9Q0 | ||||
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Entity ID: 57 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative zinc finger domain-containing protein | EB [auth BV] | 56 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A832S8D7 (Methanosarcina acetivorans) Explore A0A832S8D7 Go to UniProtKB: A0A832S8D7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832S8D7 | ||||
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Entity ID: 58 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS24 | FB [auth BW] | 101 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TJT2 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TJT2 Go to UniProtKB: Q8TJT2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TJT2 | ||||
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Entity ID: 59 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS27 | GB [auth BX] | 62 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P61931 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore P61931 Go to UniProtKB: P61931 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61931 | ||||
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Entity ID: 60 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS28 | HB [auth BY] | 76 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8TQL8 (Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)) Explore Q8TQL8 Go to UniProtKB: Q8TQL8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8TQL8 | ||||
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Entity ID: 61 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DUF5350 family protein | IB [auth BZ] | 57 | Methanosarcina acetivorans | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A832SMB7 (Methanosarcina acetivorans) Explore A0A832SMB7 Go to UniProtKB: A0A832SMB7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A832SMB7 | ||||
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Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 23S rRNA | A [auth 1] | 2,904 | Methanosarcina acetivorans |  | |
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5S rRNA | B [auth 2] | 133 | Methanosarcina acetivorans |  | |
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 16S rRNA | C [auth 3] | 1,478 | Methanosarcina acetivorans |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | IN [auth AT] KN [auth AZ] LN [auth Ab] MN [auth Ac] NN [auth Ad] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MG Query on MG | AC [auth 1] AD [auth 1] AE [auth 1] AF [auth 1] AG [auth 1] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.89 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.20.1_4487 |
| RECONSTRUCTION | cryoSPARC |
Entry History & Funding Information
Deposition Data
- Released Date: 2026-01-28 Deposition Author(s): Nissley, A.J., Cate, J.H.D.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2026-01-28
Type: Initial release
