9ZIT | pdb_00009zit

C. elegans PEZO-1 Isoform K


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: other
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This is version 1.1 of the entry. See complete history

Literature

Structures of invertebrate PEZO-1 isoforms with a compact architecture and a dispensable pore-distal N-terminal blade.

Bell, B.Jaramillo-Granada, A.M.Orlin, D.J.Weng, W.H.Wen, H.Sotomayor, M.Chesler, A.T.Baker, M.L.Cordero-Morales, J.F.Vasquez, V.

(2025) Cell Rep 45: 116878-116878

  • DOI: https://doi.org/10.1016/j.celrep.2025.116878
  • Primary Citation Related Structures: 
    9ZIS, 9ZIT

  • PubMed Abstract: 

    PIEZO channels are mechanosensitive ion channels conserved from plants to humans, yet structures exist for only a few mammalian orthologs. We define the structural and functional diversity of Caenorhabditis elegans PEZO-1, a single gene with extensive alternative splicing, by determining cryo-electron microscopy structures of three representative isoforms: G (full length), K (lacking the pore-distal N-terminal blade), and L (missing most of the blade). PEZO-1G displays mechanically evoked currents yet adopts a compact, semi-flattened conformation that significantly differs from the mammalian domes. The blades exhibit a three-step slope architecture stabilized by inter-blade latching among transmembrane helical units, yielding a circular, steering-wheel-like arrangement. A wider cap enables distinct blade-cap contacts that stabilize a "toggle-down" conformation. Isoform K also exhibits mechanically evoked currents, indicating that the pore-distal N-terminal blade is dispensable for mechanoactivation. Computational membrane-deformation modeling indicates that the isoforms impose distinct curvatures on the bilayer. Our findings indicate an evolutionarily distinct architecture for PEZO-1.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, Center for Membrane Biology, McGovern Medical School at the University of Texas Health Science Center at Houston, Houston, TX 77030, USA.

Macromolecule Content 

  • Total Structure Weight: 575.44 kDa 
  • Atom Count: 33,087 
  • Modeled Residue Count: 4,077 
  • Deposited Residue Count: 5,058 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Piezo-type mechanosensitive ion channel component 1
A, B, C
1,686Caenorhabditis elegansMutation(s): 0 
Gene Names: pezo-1C10C5.1
UniProt
Find proteins for A0A061ACU2 (Caenorhabditis elegans)
Explore A0A061ACU2 
Go to UniProtKB:  A0A061ACU2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A061ACU2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM153208

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release
  • Version 1.1: 2026-01-21
    Changes: Data collection, Database references